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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-141396377-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=141396377&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 141396377,
"ref": "T",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000321464.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-232T>A",
"hgvs_p": null,
"transcript": "ENST00000509842.5",
"protein_id": "ENSP00000426931.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 149,
"cds_start": -4,
"cds_end": null,
"cds_length": 452,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1434,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-105-7550T>A",
"hgvs_p": null,
"transcript": "NM_001376113.1",
"protein_id": "NP_001363042.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
"cds_end": null,
"cds_length": 3588,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8014,
"mane_select": "ENST00000321464.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-105-7550T>A",
"hgvs_p": null,
"transcript": "ENST00000321464.7",
"protein_id": "ENSP00000372635.5",
"transcript_support_level": 6,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
"cds_end": null,
"cds_length": 3588,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8014,
"mane_select": "NM_001376113.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-105-7550T>A",
"hgvs_p": null,
"transcript": "ENST00000509883.5",
"protein_id": "ENSP00000424254.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 770,
"cds_start": -4,
"cds_end": null,
"cds_length": 2313,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2659,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-232T>A",
"hgvs_p": null,
"transcript": "NM_001080412.3",
"protein_id": "NP_001073881.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
"cds_end": null,
"cds_length": 3588,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8413,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-232T>A",
"hgvs_p": null,
"transcript": "NM_001376114.1",
"protein_id": "NP_001363043.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
"cds_end": null,
"cds_length": 3588,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8259,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-388T>A",
"hgvs_p": null,
"transcript": "NM_001376121.1",
"protein_id": "NP_001363050.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
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"cdna_start": null,
"cdna_end": null,
"cdna_length": 8415,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-355T>A",
"hgvs_p": null,
"transcript": "NM_001376123.1",
"protein_id": "NP_001363052.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
"cds_end": null,
"cds_length": 3588,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8382,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-330T>A",
"hgvs_p": null,
"transcript": "NM_001376124.1",
"protein_id": "NP_001363053.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
"cds_end": null,
"cds_length": 3588,
"cdna_start": null,
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"cdna_length": 8357,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-383T>A",
"hgvs_p": null,
"transcript": "NM_001376125.1",
"protein_id": "NP_001363054.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1195,
"cds_start": -4,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-232T>A",
"hgvs_p": null,
"transcript": "NM_001376126.1",
"protein_id": "NP_001363055.1",
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"cdna_start": null,
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},
{
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"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 3,
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"exon_count": 6,
"intron_rank": null,
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"gene_symbol": "ZBTB38",
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"hgvs_c": "c.-355T>A",
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"protein_id": "NP_001363072.1",
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},
{
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"strand": true,
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"5_prime_UTR_variant"
],
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"exon_count": 6,
"intron_rank": null,
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"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-355T>A",
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"transcript": "NM_001376160.1",
"protein_id": "NP_001363089.1",
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},
{
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],
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"intron_rank": null,
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"gene_symbol": "ZBTB38",
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"hgvs_c": "c.-330T>A",
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},
{
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],
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"gene_symbol": "ZBTB38",
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"hgvs_c": "c.-355T>A",
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"transcript": "NM_001376170.1",
"protein_id": "NP_001363099.1",
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},
{
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"strand": true,
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],
"exon_rank": 2,
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"intron_rank": null,
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"gene_symbol": "ZBTB38",
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"hgvs_c": "c.-330T>A",
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"transcript": "NM_001376171.1",
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},
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],
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"intron_rank": null,
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"gene_symbol": "ZBTB38",
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"hgvs_c": "c.-232T>A",
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"transcript": "NM_001376175.1",
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},
{
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],
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"exon_count": 5,
"intron_rank": null,
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"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-355T>A",
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"protein_id": "NP_001363106.1",
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},
{
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"strand": true,
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],
"exon_rank": 2,
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"intron_rank": null,
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"gene_symbol": "ZBTB38",
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"hgvs_c": "c.-330T>A",
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],
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},
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],
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"gene_symbol": "ZBTB38",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": 3,
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"exon_count": 7,
"intron_rank": null,
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"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-481T>A",
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"transcript": "NM_001387970.1",
"protein_id": "NP_001374899.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"5_prime_UTR_variant"
],
"exon_rank": 5,
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"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZBTB38",
"gene_hgnc_id": 26636,
"hgvs_c": "c.-2606T>A",
"hgvs_p": null,
"transcript": "XM_047447842.1",
"protein_id": "XP_047303798.1",
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}