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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-142771309-T-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=142771309&ref=T&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 142771309,
      "ref": "T",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "ENST00000476941.6",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.633-6323T>G",
          "hgvs_p": null,
          "transcript": "NM_001251845.2",
          "protein_id": "NP_001238774.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 793,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2382,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4561,
          "mane_select": "ENST00000476941.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.633-6323T>G",
          "hgvs_p": null,
          "transcript": "ENST00000476941.6",
          "protein_id": "ENSP00000419313.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 793,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2382,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4561,
          "mane_select": "NM_001251845.2",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.531-6323T>G",
          "hgvs_p": null,
          "transcript": "ENST00000273482.10",
          "protein_id": "ENSP00000273482.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 759,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2280,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4324,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.942-6323T>G",
          "hgvs_p": null,
          "transcript": "ENST00000698238.1",
          "protein_id": "ENSP00000513620.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 896,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2691,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4561,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.531-6323T>G",
          "hgvs_p": null,
          "transcript": "NM_003304.5",
          "protein_id": "NP_003295.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 759,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2280,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4459,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.483-6323T>G",
          "hgvs_p": null,
          "transcript": "NM_001413361.1",
          "protein_id": "NP_001400290.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 743,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2232,
          "cdna_start": null,
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          "cdna_length": 6050,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.531-9525T>G",
          "hgvs_p": null,
          "transcript": "NM_001413362.1",
          "protein_id": "NP_001400291.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 715,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2148,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4327,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.531-6323T>G",
          "hgvs_p": null,
          "transcript": "NM_001413363.1",
          "protein_id": "NP_001400292.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 711,
          "cds_start": -4,
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          "cds_length": 2136,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4315,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 11,
          "intron_rank": 2,
          "intron_rank_end": null,
          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.381-6323T>G",
          "hgvs_p": null,
          "transcript": "NM_001413376.1",
          "protein_id": "NP_001400305.1",
          "transcript_support_level": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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        },
        {
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          "exon_count": 12,
          "intron_rank": 3,
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          "gene_symbol": "TRPC1",
          "gene_hgnc_id": 12333,
          "hgvs_c": "c.339-6323T>G",
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          "transcript": "NM_001413375.1",
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          "gene_symbol": "TRPC1",
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        {
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          "gene_symbol": "TRPC1",
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      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
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      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": -0.9700000286102295,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
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      "splice_prediction_selected": "Benign",
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      "bayesdelnoaf_score": -0.97,
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      "phylop100way_prediction": "Benign",
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      "acmg_score": -2,
      "acmg_classification": "Likely_benign",
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      "acmg_by_gene": [
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          "pathogenic_score": 2,
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            "BP4_Strong"
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          "verdict": "Likely_benign",
          "transcript": "ENST00000476941.6",
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}