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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-183650375-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=183650375&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 4,
          "criteria": [
            "BS1"
          ],
          "effects": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "gene_symbol": "KLHL24",
          "hgnc_id": 25947,
          "hgvs_c": "c.-948C>T",
          "hgvs_p": null,
          "inheritance_mode": "AR,AD",
          "pathogenic_score": 0,
          "score": -4,
          "transcript": "NM_001349428.1",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BS1",
      "acmg_score": -4,
      "allele_count_reference_population": 42,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.8595,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Pathogenic",
      "bayesdelnoaf_score": 0.21,
      "chr": "3",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "Inborn genetic diseases",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Uncertain_significance",
      "computational_score_selected": 0.43123796582221985,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 600,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7331,
          "cdna_start": 314,
          "cds_end": null,
          "cds_length": 1803,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_017644.3",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000242810.11",
          "protein_coding": true,
          "protein_id": "NP_060114.2",
          "strand": true,
          "transcript": "NM_017644.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 600,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 7331,
          "cdna_start": 314,
          "cds_end": null,
          "cds_length": 1803,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000242810.11",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_017644.3",
          "protein_coding": true,
          "protein_id": "ENSP00000242810.6",
          "strand": true,
          "transcript": "ENST00000242810.11",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 600,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7380,
          "cdna_start": 405,
          "cds_end": null,
          "cds_length": 1803,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000454652.6",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000395012.1",
          "strand": true,
          "transcript": "ENST00000454652.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 319,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7454,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 960,
          "cds_start": null,
          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001349428.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.-948C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336357.1",
          "strand": true,
          "transcript": "NM_001349428.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 319,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7443,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 960,
          "cds_start": null,
          "consequences": [
            "5_prime_UTR_premature_start_codon_gain_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001349429.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.-948C>T",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336358.1",
          "strand": true,
          "transcript": "NM_001349429.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 652,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2431,
          "cdna_start": 314,
          "cds_end": null,
          "cds_length": 1959,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000943871.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000613930.1",
          "strand": true,
          "transcript": "ENST00000943871.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7406,
          "cdna_start": 314,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001349413.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336342.1",
          "strand": true,
          "transcript": "NM_001349413.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7388,
          "cdna_start": 296,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001349414.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336343.1",
          "strand": true,
          "transcript": "NM_001349414.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7343,
          "cdna_start": 251,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_001349415.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336344.1",
          "strand": true,
          "transcript": "NM_001349415.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7360,
          "cdna_start": 268,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001349416.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336345.1",
          "strand": true,
          "transcript": "NM_001349416.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7451,
          "cdna_start": 359,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001349417.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336346.1",
          "strand": true,
          "transcript": "NM_001349417.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7497,
          "cdna_start": 405,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001349418.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001336347.1",
          "strand": true,
          "transcript": "NM_001349418.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7503,
          "cdna_start": 411,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000853856.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000523915.1",
          "strand": true,
          "transcript": "ENST00000853856.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4656,
          "cdna_start": 335,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000853858.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000523917.1",
          "strand": true,
          "transcript": "ENST00000853858.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3167,
          "cdna_start": 303,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000853866.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000523925.1",
          "strand": true,
          "transcript": "ENST00000853866.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2335,
          "cdna_start": 372,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000853875.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000523934.1",
          "strand": true,
          "transcript": "ENST00000853875.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7278,
          "cdna_start": 230,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000943850.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000613909.1",
          "strand": true,
          "transcript": "ENST00000943850.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4597,
          "cdna_start": 617,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000943851.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000613910.1",
          "strand": true,
          "transcript": "ENST00000943851.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 625,
          "aa_ref": "R",
          "aa_start": 7,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4225,
          "cdna_start": 708,
          "cds_end": null,
          "cds_length": 1878,
          "cds_start": 19,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000943856.1",
          "gene_hgnc_id": 25947,
          "gene_symbol": "KLHL24",
          "hgvs_c": "c.19C>T",
          "hgvs_p": "p.Arg7Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.