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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-184321181-C-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=184321181&ref=C&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 184321181,
      "ref": "C",
      "alt": "A",
      "effect": "intron_variant",
      "transcript": "ENST00000346169.7",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.698-101C>A",
          "hgvs_p": null,
          "transcript": "NM_198241.3",
          "protein_id": "NP_937884.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1599,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4800,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5405,
          "mane_select": "ENST00000346169.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.698-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000346169.7",
          "protein_id": "ENSP00000316879.5",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1599,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4800,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5405,
          "mane_select": "NM_198241.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.719-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000352767.7",
          "protein_id": "ENSP00000338020.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1606,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4821,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5484,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.719-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000382330.7",
          "protein_id": "ENSP00000371767.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1606,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4821,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5129,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": 8,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.698-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000342981.8",
          "protein_id": "ENSP00000343450.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1600,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4803,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5667,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.578-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000411531.5",
          "protein_id": "ENSP00000395974.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1560,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4683,
          "cdna_start": null,
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          "cdna_length": 4683,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": 9,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.578-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000414031.5",
          "protein_id": "ENSP00000391935.1",
          "transcript_support_level": 1,
          "aa_start": null,
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          "aa_length": 1559,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4680,
          "cdna_start": null,
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          "cdna_length": 5569,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.206-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000350481.9",
          "protein_id": "ENSP00000317600.8",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1435,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4308,
          "cdna_start": null,
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          "cdna_length": 4990,
          "mane_select": null,
          "mane_plus": null,
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          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
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          "exon_count": 13,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "c.206-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000444861.5",
          "protein_id": "ENSP00000398145.1",
          "transcript_support_level": 1,
          "aa_start": null,
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          "aa_length": 756,
          "cds_start": -4,
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          "cdna_start": null,
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          "mane_select": null,
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        {
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          "strand": true,
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          "exon_rank": null,
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          "exon_count": 29,
          "intron_rank": 5,
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          "gene_symbol": "EIF4G1",
          "gene_hgnc_id": 3296,
          "hgvs_c": "n.*137-101C>A",
          "hgvs_p": null,
          "transcript": "ENST00000442406.5",
          "protein_id": "ENSP00000400351.1",
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        {
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        {
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}