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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-18577361-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=18577361&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 18577361,
"ref": "A",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000683051.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.610-8026A>T",
"hgvs_p": null,
"transcript": "ENST00000456253.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 808,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.462-8259A>T",
"hgvs_p": null,
"transcript": "ENST00000595250.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 604,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.364+50035A>T",
"hgvs_p": null,
"transcript": "ENST00000595388.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 788,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.495-8026A>T",
"hgvs_p": null,
"transcript": "ENST00000595865.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 868,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.156-8026A>T",
"hgvs_p": null,
"transcript": "ENST00000596139.3",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 582,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.299-47755A>T",
"hgvs_p": null,
"transcript": "ENST00000596152.3",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 610,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.365-8259A>T",
"hgvs_p": null,
"transcript": "ENST00000596307.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 878,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.543-14274A>T",
"hgvs_p": null,
"transcript": "ENST00000598390.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1363,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.365-8026A>T",
"hgvs_p": null,
"transcript": "ENST00000599762.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 655,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.384-8259A>T",
"hgvs_p": null,
"transcript": "ENST00000600177.5",
"protein_id": null,
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"aa_start": null,
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"mane_select": null,
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"feature": null
},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 3,
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"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.360-14274A>T",
"hgvs_p": null,
"transcript": "ENST00000625533.3",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
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},
{
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"strand": true,
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],
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"exon_count": 9,
"intron_rank": 5,
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"gene_symbol": "SATB1-AS1",
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"hgvs_c": "n.593-8026A>T",
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"transcript": "ENST00000625591.2",
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},
{
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],
"exon_rank": null,
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"hgvs_c": "n.554-8026A>T",
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"transcript": "ENST00000626023.2",
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},
{
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],
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},
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],
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},
{
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"strand": true,
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],
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"intron_rank": 2,
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"gene_symbol": "SATB1-AS1",
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"hgvs_c": "n.195+50035A>T",
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"transcript": "ENST00000626982.2",
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},
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],
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],
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"gene_symbol": "SATB1-AS1",
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"hgvs_c": "n.351-29638A>T",
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},
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],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": 3,
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"gene_symbol": "SATB1-AS1",
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"hgvs_c": "n.536-29638A>T",
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"transcript": "ENST00000627668.1",
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],
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"intron_rank": 1,
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},
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],
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"gene_symbol": "SATB1-AS1",
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},
{
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"strand": true,
"consequences": [
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],
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"exon_count": 6,
"intron_rank": 5,
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"gene_symbol": "SATB1-AS1",
"gene_hgnc_id": 50687,
"hgvs_c": "n.617+29168A>T",
"hgvs_p": null,
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"protein_id": null,
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},
{
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],
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