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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-186666103-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=186666103&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 186666103,
"ref": "C",
"alt": "A",
"effect": "stop_gained",
"transcript": "NM_000412.5",
"consequences": [
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "NM_000412.5",
"protein_id": "NP_000403.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 525,
"cds_start": 72,
"cds_end": null,
"cds_length": 1578,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000232003.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000412.5"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000232003.5",
"protein_id": "ENSP00000232003.4",
"transcript_support_level": 1,
"aa_start": 24,
"aa_end": null,
"aa_length": 525,
"cds_start": 72,
"cds_end": null,
"cds_length": 1578,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_000412.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000232003.5"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887868.1",
"protein_id": "ENSP00000557927.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 569,
"cds_start": 72,
"cds_end": null,
"cds_length": 1710,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887868.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887859.1",
"protein_id": "ENSP00000557918.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 561,
"cds_start": 72,
"cds_end": null,
"cds_length": 1686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887859.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887857.1",
"protein_id": "ENSP00000557916.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 533,
"cds_start": 72,
"cds_end": null,
"cds_length": 1602,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887857.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887858.1",
"protein_id": "ENSP00000557917.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 532,
"cds_start": 72,
"cds_end": null,
"cds_length": 1599,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887858.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887860.1",
"protein_id": "ENSP00000557919.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 524,
"cds_start": 72,
"cds_end": null,
"cds_length": 1575,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887860.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887863.1",
"protein_id": "ENSP00000557922.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 522,
"cds_start": 72,
"cds_end": null,
"cds_length": 1569,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887863.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887869.1",
"protein_id": "ENSP00000557928.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 522,
"cds_start": 72,
"cds_end": null,
"cds_length": 1569,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887869.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887864.1",
"protein_id": "ENSP00000557923.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 519,
"cds_start": 72,
"cds_end": null,
"cds_length": 1560,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887864.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887865.1",
"protein_id": "ENSP00000557924.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 510,
"cds_start": 72,
"cds_end": null,
"cds_length": 1533,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887865.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887862.1",
"protein_id": "ENSP00000557921.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 498,
"cds_start": 72,
"cds_end": null,
"cds_length": 1497,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887862.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887866.1",
"protein_id": "ENSP00000557925.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 491,
"cds_start": 72,
"cds_end": null,
"cds_length": 1476,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887866.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887861.1",
"protein_id": "ENSP00000557920.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 486,
"cds_start": 72,
"cds_end": null,
"cds_length": 1461,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887861.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887870.1",
"protein_id": "ENSP00000557929.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 439,
"cds_start": 72,
"cds_end": null,
"cds_length": 1320,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887870.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "ENST00000887867.1",
"protein_id": "ENSP00000557926.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 373,
"cds_start": 72,
"cds_end": null,
"cds_length": 1122,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000887867.1"
},
{
"aa_ref": "C",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"stop_gained"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "c.72C>A",
"hgvs_p": "p.Cys24*",
"transcript": "XM_005247415.5",
"protein_id": "XP_005247472.1",
"transcript_support_level": null,
"aa_start": 24,
"aa_end": null,
"aa_length": 533,
"cds_start": 72,
"cds_end": null,
"cds_length": 1602,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005247415.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HRG",
"gene_hgnc_id": 5181,
"hgvs_c": "n.504C>A",
"hgvs_p": null,
"transcript": "ENST00000468154.1",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000468154.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HRG-AS1",
"gene_hgnc_id": 55915,
"hgvs_c": "n.508+865G>T",
"hgvs_p": null,
"transcript": "ENST00000625303.2",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000625303.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HRG-AS1",
"gene_hgnc_id": 55915,
"hgvs_c": "n.214-23975G>T",
"hgvs_p": null,
"transcript": "ENST00000625386.2",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000625386.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HRG-AS1",
"gene_hgnc_id": 55915,
"hgvs_c": "n.327-14232G>T",
"hgvs_p": null,
"transcript": "ENST00000625741.2",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000625741.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HRG-AS1",
"gene_hgnc_id": 55915,
"hgvs_c": "n.564+865G>T",
"hgvs_p": null,
"transcript": "ENST00000625826.1",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000625826.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
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{
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"clinvar_classification": "Uncertain significance",
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"phenotype_combined": "Hereditary thrombophilia due to congenital histidine-rich (poly-L) glycoprotein deficiency",
"pathogenicity_classification_combined": "Uncertain significance",
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}
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}