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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-3040139-G-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=3040139&ref=G&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 3040139,
      "ref": "G",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_175607.3",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "NM_175607.3",
          "protein_id": "NP_783200.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2605,
          "cdna_end": null,
          "cdna_length": 5159,
          "mane_select": "ENST00000418658.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_175607.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "ENST00000418658.6",
          "protein_id": "ENSP00000396010.1",
          "transcript_support_level": 5,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2605,
          "cdna_end": null,
          "cdna_length": 5159,
          "mane_select": "NM_175607.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000418658.6"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.1282G>T",
          "hgvs_p": "p.Asp428Tyr",
          "transcript": "ENST00000397459.6",
          "protein_id": "ENSP00000380600.2",
          "transcript_support_level": 1,
          "aa_start": 428,
          "aa_end": null,
          "aa_length": 698,
          "cds_start": 1282,
          "cds_end": null,
          "cds_length": 2097,
          "cdna_start": 1372,
          "cdna_end": null,
          "cdna_length": 2322,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397459.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "n.516G>T",
          "hgvs_p": null,
          "transcript": "ENST00000484686.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3064,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000484686.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "NM_001206955.2",
          "protein_id": "NP_001193884.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2650,
          "cdna_end": null,
          "cdna_length": 5204,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001206955.2"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "NM_001350095.2",
          "protein_id": "NP_001337024.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2899,
          "cdna_end": null,
          "cdna_length": 5453,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001350095.2"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "ENST00000397461.5",
          "protein_id": "ENSP00000380602.1",
          "transcript_support_level": 5,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2650,
          "cdna_end": null,
          "cdna_length": 5198,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000397461.5"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "ENST00000427331.5",
          "protein_id": "ENSP00000413642.1",
          "transcript_support_level": 5,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2429,
          "cdna_end": null,
          "cdna_length": 4980,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000427331.5"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "ENST00000968521.1",
          "protein_id": "ENSP00000638580.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2682,
          "cdna_end": null,
          "cdna_length": 5240,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000968521.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2104G>T",
          "hgvs_p": "p.Asp702Tyr",
          "transcript": "ENST00000968522.1",
          "protein_id": "ENSP00000638581.1",
          "transcript_support_level": null,
          "aa_start": 702,
          "aa_end": null,
          "aa_length": 972,
          "cds_start": 2104,
          "cds_end": null,
          "cds_length": 2919,
          "cdna_start": 2522,
          "cdna_end": null,
          "cdna_length": 5073,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000968522.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.1282G>T",
          "hgvs_p": "p.Asp428Tyr",
          "transcript": "NM_175613.3",
          "protein_id": "NP_783302.1",
          "transcript_support_level": null,
          "aa_start": 428,
          "aa_end": null,
          "aa_length": 698,
          "cds_start": 1282,
          "cds_end": null,
          "cds_length": 2097,
          "cdna_start": 1367,
          "cdna_end": null,
          "cdna_length": 3921,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_175613.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 11,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.1279G>T",
          "hgvs_p": "p.Asp427Tyr",
          "transcript": "NM_001206956.2",
          "protein_id": "NP_001193885.1",
          "transcript_support_level": null,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 697,
          "cds_start": 1279,
          "cds_end": null,
          "cds_length": 2094,
          "cdna_start": 1364,
          "cdna_end": null,
          "cdna_length": 3918,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001206956.2"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_011533425.4",
          "protein_id": "XP_011531727.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2523,
          "cdna_end": null,
          "cdna_length": 5077,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011533425.4"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_011533427.3",
          "protein_id": "XP_011531729.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2880,
          "cdna_end": null,
          "cdna_length": 5434,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011533427.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_011533428.3",
          "protein_id": "XP_011531730.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2449,
          "cdna_end": null,
          "cdna_length": 5003,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011533428.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_011533429.3",
          "protein_id": "XP_011531731.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 4625,
          "cdna_end": null,
          "cdna_length": 7179,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011533429.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_011533430.3",
          "protein_id": "XP_011531732.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2778,
          "cdna_end": null,
          "cdna_length": 5332,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011533430.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_017005782.2",
          "protein_id": "XP_016861271.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 2673,
          "cdna_end": null,
          "cdna_length": 5227,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017005782.2"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_017005783.2",
          "protein_id": "XP_016861272.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
          "cds_length": 3081,
          "cdna_start": 3496,
          "cdna_end": null,
          "cdna_length": 6050,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017005783.2"
        },
        {
          "aa_ref": "D",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CNTN4",
          "gene_hgnc_id": 2174,
          "hgvs_c": "c.2266G>T",
          "hgvs_p": "p.Asp756Tyr",
          "transcript": "XM_017005784.3",
          "protein_id": "XP_016861273.1",
          "transcript_support_level": null,
          "aa_start": 756,
          "aa_end": null,
          "aa_length": 1026,
          "cds_start": 2266,
          "cds_end": null,
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      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
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  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.