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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-3151023-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=3151023&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 3151023,
"ref": "A",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_016302.4",
"consequences": [
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1171T>G",
"hgvs_p": "p.Cys391Gly",
"transcript": "NM_016302.4",
"protein_id": "NP_057386.2",
"transcript_support_level": null,
"aa_start": 391,
"aa_end": null,
"aa_length": 442,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1329,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000231948.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_016302.4"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1171T>G",
"hgvs_p": "p.Cys391Gly",
"transcript": "ENST00000231948.9",
"protein_id": "ENSP00000231948.4",
"transcript_support_level": 1,
"aa_start": 391,
"aa_end": null,
"aa_length": 442,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1329,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_016302.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000231948.9"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1168T>G",
"hgvs_p": "p.Cys390Gly",
"transcript": "ENST00000432408.6",
"protein_id": "ENSP00000412499.2",
"transcript_support_level": 1,
"aa_start": 390,
"aa_end": null,
"aa_length": 441,
"cds_start": 1168,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000432408.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "n.3516T>G",
"hgvs_p": null,
"transcript": "ENST00000488263.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000488263.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "n.3597T>G",
"hgvs_p": null,
"transcript": "ENST00000491834.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000491834.5"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1171T>G",
"hgvs_p": "p.Cys391Gly",
"transcript": "ENST00000639284.1",
"protein_id": "ENSP00000491442.1",
"transcript_support_level": 5,
"aa_start": 391,
"aa_end": null,
"aa_length": 490,
"cds_start": 1171,
"cds_end": null,
"cds_length": 1473,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000639284.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1210T>G",
"hgvs_p": "p.Cys404Gly",
"transcript": "ENST00000925602.1",
"protein_id": "ENSP00000595661.1",
"transcript_support_level": null,
"aa_start": 404,
"aa_end": null,
"aa_length": 455,
"cds_start": 1210,
"cds_end": null,
"cds_length": 1368,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925602.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1168T>G",
"hgvs_p": "p.Cys390Gly",
"transcript": "NM_001173482.1",
"protein_id": "NP_001166953.1",
"transcript_support_level": null,
"aa_start": 390,
"aa_end": null,
"aa_length": 441,
"cds_start": 1168,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001173482.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1168T>G",
"hgvs_p": "p.Cys390Gly",
"transcript": "ENST00000866173.1",
"protein_id": "ENSP00000536232.1",
"transcript_support_level": null,
"aa_start": 390,
"aa_end": null,
"aa_length": 441,
"cds_start": 1168,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866173.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1165T>G",
"hgvs_p": "p.Cys389Gly",
"transcript": "ENST00000866176.1",
"protein_id": "ENSP00000536235.1",
"transcript_support_level": null,
"aa_start": 389,
"aa_end": null,
"aa_length": 440,
"cds_start": 1165,
"cds_end": null,
"cds_length": 1323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866176.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1165T>G",
"hgvs_p": "p.Cys389Gly",
"transcript": "ENST00000925600.1",
"protein_id": "ENSP00000595659.1",
"transcript_support_level": null,
"aa_start": 389,
"aa_end": null,
"aa_length": 440,
"cds_start": 1165,
"cds_end": null,
"cds_length": 1323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925600.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1153T>G",
"hgvs_p": "p.Cys385Gly",
"transcript": "ENST00000866174.1",
"protein_id": "ENSP00000536233.1",
"transcript_support_level": null,
"aa_start": 385,
"aa_end": null,
"aa_length": 436,
"cds_start": 1153,
"cds_end": null,
"cds_length": 1311,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866174.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1108T>G",
"hgvs_p": "p.Cys370Gly",
"transcript": "ENST00000970440.1",
"protein_id": "ENSP00000640499.1",
"transcript_support_level": null,
"aa_start": 370,
"aa_end": null,
"aa_length": 421,
"cds_start": 1108,
"cds_end": null,
"cds_length": 1266,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970440.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1036T>G",
"hgvs_p": "p.Cys346Gly",
"transcript": "ENST00000925599.1",
"protein_id": "ENSP00000595658.1",
"transcript_support_level": null,
"aa_start": 346,
"aa_end": null,
"aa_length": 397,
"cds_start": 1036,
"cds_end": null,
"cds_length": 1194,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925599.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1024T>G",
"hgvs_p": "p.Cys342Gly",
"transcript": "ENST00000424814.5",
"protein_id": "ENSP00000411047.1",
"transcript_support_level": 5,
"aa_start": 342,
"aa_end": null,
"aa_length": 393,
"cds_start": 1024,
"cds_end": null,
"cds_length": 1182,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000424814.5"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1021T>G",
"hgvs_p": "p.Cys341Gly",
"transcript": "ENST00000866177.1",
"protein_id": "ENSP00000536236.1",
"transcript_support_level": null,
"aa_start": 341,
"aa_end": null,
"aa_length": 392,
"cds_start": 1021,
"cds_end": null,
"cds_length": 1179,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866177.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.970T>G",
"hgvs_p": "p.Cys324Gly",
"transcript": "ENST00000970439.1",
"protein_id": "ENSP00000640498.1",
"transcript_support_level": null,
"aa_start": 324,
"aa_end": null,
"aa_length": 375,
"cds_start": 970,
"cds_end": null,
"cds_length": 1128,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000970439.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.967T>G",
"hgvs_p": "p.Cys323Gly",
"transcript": "ENST00000866175.1",
"protein_id": "ENSP00000536234.1",
"transcript_support_level": null,
"aa_start": 323,
"aa_end": null,
"aa_length": 374,
"cds_start": 967,
"cds_end": null,
"cds_length": 1125,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866175.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.838T>G",
"hgvs_p": "p.Cys280Gly",
"transcript": "ENST00000925601.1",
"protein_id": "ENSP00000595660.1",
"transcript_support_level": null,
"aa_start": 280,
"aa_end": null,
"aa_length": 331,
"cds_start": 838,
"cds_end": null,
"cds_length": 996,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925601.1"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.1039T>G",
"hgvs_p": "p.Cys347Gly",
"transcript": "XM_011533791.4",
"protein_id": "XP_011532093.1",
"transcript_support_level": null,
"aa_start": 347,
"aa_end": null,
"aa_length": 398,
"cds_start": 1039,
"cds_end": null,
"cds_length": 1197,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011533791.4"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.982T>G",
"hgvs_p": "p.Cys328Gly",
"transcript": "XM_005265202.5",
"protein_id": "XP_005265259.1",
"transcript_support_level": null,
"aa_start": 328,
"aa_end": null,
"aa_length": 379,
"cds_start": 982,
"cds_end": null,
"cds_length": 1140,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005265202.5"
},
{
"aa_ref": "C",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CRBN",
"gene_hgnc_id": 30185,
"hgvs_c": "c.679T>G",
"hgvs_p": "p.Cys227Gly",
"transcript": "XM_047448254.1",
"protein_id": "XP_047304210.1",
"transcript_support_level": null,
"aa_start": 227,
"aa_end": null,
"aa_length": 278,
"cds_start": 679,
"cds_end": null,
"cds_length": 837,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047448254.1"
},
{
"aa_ref": null,
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{
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"PP3_Moderate"
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"verdict": "Likely_pathogenic",
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{
"score": 4,
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],
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"clinvar_review_status": "",
"clinvar_submissions_summary": "",
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"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}