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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-31664114-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=31664114&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "OSBPL10",
          "hgnc_id": 16395,
          "hgvs_c": "c.2215C>T",
          "hgvs_p": "p.Arg739Cys",
          "inheritance_mode": "",
          "pathogenic_score": 2,
          "score": 0,
          "transcript": "NM_017784.5",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_score": 0,
      "allele_count_reference_population": 4,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.0687,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.48,
      "chr": "3",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.1313174068927765,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 764,
          "aa_ref": "R",
          "aa_start": 739,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3625,
          "cdna_start": 2298,
          "cds_end": null,
          "cds_length": 2295,
          "cds_start": 2215,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "NM_017784.5",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2215C>T",
          "hgvs_p": "p.Arg739Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000396556.7",
          "protein_coding": true,
          "protein_id": "NP_060254.2",
          "strand": false,
          "transcript": "NM_017784.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 764,
          "aa_ref": "R",
          "aa_start": 739,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3625,
          "cdna_start": 2298,
          "cds_end": null,
          "cds_length": 2295,
          "cds_start": 2215,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000396556.7",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2215C>T",
          "hgvs_p": "p.Arg739Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_017784.5",
          "protein_coding": true,
          "protein_id": "ENSP00000379804.2",
          "strand": false,
          "transcript": "ENST00000396556.7",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 729,
          "aa_ref": "R",
          "aa_start": 704,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4136,
          "cdna_start": 2237,
          "cds_end": null,
          "cds_length": 2190,
          "cds_start": 2110,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000959571.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2110C>T",
          "hgvs_p": "p.Arg704Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000629630.1",
          "strand": false,
          "transcript": "ENST00000959571.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 714,
          "aa_ref": "R",
          "aa_start": 689,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3611,
          "cdna_start": 2282,
          "cds_end": null,
          "cds_length": 2145,
          "cds_start": 2065,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000911816.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2065C>T",
          "hgvs_p": "p.Arg689Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000581875.1",
          "strand": false,
          "transcript": "ENST00000911816.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 700,
          "aa_ref": "R",
          "aa_start": 675,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3433,
          "cdna_start": 2106,
          "cds_end": null,
          "cds_length": 2103,
          "cds_start": 2023,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "NM_001174060.2",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2023C>T",
          "hgvs_p": "p.Arg675Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001167531.1",
          "strand": false,
          "transcript": "NM_001174060.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 700,
          "aa_ref": "R",
          "aa_start": 675,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2624,
          "cdna_start": 2144,
          "cds_end": null,
          "cds_length": 2103,
          "cds_start": 2023,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "ENST00000438237.6",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2023C>T",
          "hgvs_p": "p.Arg675Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000406124.2",
          "strand": false,
          "transcript": "ENST00000438237.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 592,
          "aa_ref": "R",
          "aa_start": 567,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6431,
          "cdna_start": 2167,
          "cds_end": null,
          "cds_length": 1779,
          "cds_start": 1699,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000911815.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1699C>T",
          "hgvs_p": "p.Arg567Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000581874.1",
          "strand": false,
          "transcript": "ENST00000911815.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 557,
          "aa_ref": "R",
          "aa_start": 532,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3044,
          "cdna_start": 1718,
          "cds_end": null,
          "cds_length": 1674,
          "cds_start": 1594,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000959572.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1594C>T",
          "hgvs_p": "p.Arg532Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000629631.1",
          "strand": false,
          "transcript": "ENST00000959572.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 537,
          "aa_ref": "R",
          "aa_start": 507,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7723,
          "cdna_start": 1521,
          "cds_end": null,
          "cds_length": 1614,
          "cds_start": 1519,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 8,
          "exon_rank_end": null,
          "feature": "ENST00000429492.6",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1519C>T",
          "hgvs_p": "p.Arg507Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000416078.2",
          "strand": false,
          "transcript": "ENST00000429492.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 769,
          "aa_ref": "R",
          "aa_start": 739,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4289,
          "cdna_start": 2298,
          "cds_end": null,
          "cds_length": 2310,
          "cds_start": 2215,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "XM_005264843.5",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2215C>T",
          "hgvs_p": "p.Arg739Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_005264900.1",
          "strand": false,
          "transcript": "XM_005264843.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 705,
          "aa_ref": "R",
          "aa_start": 675,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4097,
          "cdna_start": 2106,
          "cds_end": null,
          "cds_length": 2118,
          "cds_start": 2023,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "XM_005264844.6",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.2023C>T",
          "hgvs_p": "p.Arg675Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_005264901.1",
          "strand": false,
          "transcript": "XM_005264844.6",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 678,
          "aa_ref": "R",
          "aa_start": 648,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4222,
          "cdna_start": 2231,
          "cds_end": null,
          "cds_length": 2037,
          "cds_start": 1942,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "XM_047447385.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1942C>T",
          "hgvs_p": "p.Arg648Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047303341.1",
          "strand": false,
          "transcript": "XM_047447385.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 673,
          "aa_ref": "R",
          "aa_start": 648,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3664,
          "cdna_start": 2337,
          "cds_end": null,
          "cds_length": 2022,
          "cds_start": 1942,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "XM_047447386.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1942C>T",
          "hgvs_p": "p.Arg648Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047303342.1",
          "strand": false,
          "transcript": "XM_047447386.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 632,
          "aa_ref": "R",
          "aa_start": 602,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4520,
          "cdna_start": 2529,
          "cds_end": null,
          "cds_length": 1899,
          "cds_start": 1804,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "XM_047447387.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1804C>T",
          "hgvs_p": "p.Arg602Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047303343.1",
          "strand": false,
          "transcript": "XM_047447387.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 632,
          "aa_ref": "R",
          "aa_start": 602,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4003,
          "cdna_start": 2012,
          "cds_end": null,
          "cds_length": 1899,
          "cds_start": 1804,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "XM_047447388.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1804C>T",
          "hgvs_p": "p.Arg602Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047303344.1",
          "strand": false,
          "transcript": "XM_047447388.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 614,
          "aa_ref": "R",
          "aa_start": 584,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4030,
          "cdna_start": 2039,
          "cds_end": null,
          "cds_length": 1845,
          "cds_start": 1750,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "XM_047447389.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1750C>T",
          "hgvs_p": "p.Arg584Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047303345.1",
          "strand": false,
          "transcript": "XM_047447389.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 609,
          "aa_ref": "R",
          "aa_start": 584,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3479,
          "cdna_start": 2152,
          "cds_end": null,
          "cds_length": 1830,
          "cds_start": 1750,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "XM_047447390.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1750C>T",
          "hgvs_p": "p.Arg584Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047303346.1",
          "strand": false,
          "transcript": "XM_047447390.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 596,
          "aa_ref": "R",
          "aa_start": 566,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3951,
          "cdna_start": 1960,
          "cds_end": null,
          "cds_length": 1791,
          "cds_start": 1696,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "XM_047447392.1",
          "gene_hgnc_id": 16395,
          "gene_symbol": "OSBPL10",
          "hgvs_c": "c.1696C>T",
          "hgvs_p": "p.Arg566Cys",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_047303348.1",
          "strand": false,
          "transcript": "XM_047447392.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "C",
          "aa_end": null,
          "aa_length": 596,
          "aa_ref": "R",
          "aa_start": 566,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3964,
          "cdna_start": 1973,
          "cds_end": null,
          "cds_length": 1791,
          "cds_start": 1696,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 10,
          "exon_rank_end": null,
          "feature": "XM_047447393.1",
          "gene_hgnc_id": 16395,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.