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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-33498666-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=33498666&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 33498666,
      "ref": "C",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001365628.1",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4486G>C",
          "hgvs_p": "p.Ala1496Pro",
          "transcript": "NM_001365631.1",
          "protein_id": "NP_001352560.1",
          "transcript_support_level": null,
          "aa_start": 1496,
          "aa_end": null,
          "aa_length": 1506,
          "cds_start": 4486,
          "cds_end": null,
          "cds_length": 4521,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000682230.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365631.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4486G>C",
          "hgvs_p": "p.Ala1496Pro",
          "transcript": "ENST00000682230.1",
          "protein_id": "ENSP00000507498.1",
          "transcript_support_level": null,
          "aa_start": 1496,
          "aa_end": null,
          "aa_length": 1506,
          "cds_start": 4486,
          "cds_end": null,
          "cds_length": 4521,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001365631.1",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000682230.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4573G>C",
          "hgvs_p": "p.Ala1525Pro",
          "transcript": "NM_001365628.1",
          "protein_id": "NP_001352557.1",
          "transcript_support_level": null,
          "aa_start": 1525,
          "aa_end": null,
          "aa_length": 1535,
          "cds_start": 4573,
          "cds_end": null,
          "cds_length": 4608,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365628.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4570G>C",
          "hgvs_p": "p.Ala1524Pro",
          "transcript": "NM_001365629.1",
          "protein_id": "NP_001352558.1",
          "transcript_support_level": null,
          "aa_start": 1524,
          "aa_end": null,
          "aa_length": 1534,
          "cds_start": 4570,
          "cds_end": null,
          "cds_length": 4605,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365629.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4549G>C",
          "hgvs_p": "p.Ala1517Pro",
          "transcript": "NM_001365627.1",
          "protein_id": "NP_001352556.1",
          "transcript_support_level": null,
          "aa_start": 1517,
          "aa_end": null,
          "aa_length": 1527,
          "cds_start": 4549,
          "cds_end": null,
          "cds_length": 4584,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365627.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4546G>C",
          "hgvs_p": "p.Ala1516Pro",
          "transcript": "NM_001375694.1",
          "protein_id": "NP_001362623.1",
          "transcript_support_level": null,
          "aa_start": 1516,
          "aa_end": null,
          "aa_length": 1526,
          "cds_start": 4546,
          "cds_end": null,
          "cds_length": 4581,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375694.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 38,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4522G>C",
          "hgvs_p": "p.Ala1508Pro",
          "transcript": "NM_001375697.1",
          "protein_id": "NP_001362626.1",
          "transcript_support_level": null,
          "aa_start": 1508,
          "aa_end": null,
          "aa_length": 1518,
          "cds_start": 4522,
          "cds_end": null,
          "cds_length": 4557,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375697.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 40,
          "exon_rank_end": null,
          "exon_count": 40,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4513G>C",
          "hgvs_p": "p.Ala1505Pro",
          "transcript": "NM_015097.3",
          "protein_id": "NP_055912.2",
          "transcript_support_level": null,
          "aa_start": 1505,
          "aa_end": null,
          "aa_length": 1515,
          "cds_start": 4513,
          "cds_end": null,
          "cds_length": 4548,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_015097.3"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4510G>C",
          "hgvs_p": "p.Ala1504Pro",
          "transcript": "NM_001375700.1",
          "protein_id": "NP_001362629.1",
          "transcript_support_level": null,
          "aa_start": 1504,
          "aa_end": null,
          "aa_length": 1514,
          "cds_start": 4510,
          "cds_end": null,
          "cds_length": 4545,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375700.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4510G>C",
          "hgvs_p": "p.Ala1504Pro",
          "transcript": "NM_001375701.1",
          "protein_id": "NP_001362630.1",
          "transcript_support_level": null,
          "aa_start": 1504,
          "aa_end": null,
          "aa_length": 1514,
          "cds_start": 4510,
          "cds_end": null,
          "cds_length": 4545,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375701.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4510G>C",
          "hgvs_p": "p.Ala1504Pro",
          "transcript": "ENST00000468888.6",
          "protein_id": "ENSP00000419974.2",
          "transcript_support_level": 5,
          "aa_start": 1504,
          "aa_end": null,
          "aa_length": 1514,
          "cds_start": 4510,
          "cds_end": null,
          "cds_length": 4545,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000468888.6"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 39,
          "exon_rank_end": null,
          "exon_count": 39,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4507G>C",
          "hgvs_p": "p.Ala1503Pro",
          "transcript": "ENST00000399362.8",
          "protein_id": "ENSP00000382297.4",
          "transcript_support_level": 5,
          "aa_start": 1503,
          "aa_end": null,
          "aa_length": 1513,
          "cds_start": 4507,
          "cds_end": null,
          "cds_length": 4542,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000399362.8"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 38,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4495G>C",
          "hgvs_p": "p.Ala1499Pro",
          "transcript": "NM_001365630.1",
          "protein_id": "NP_001352559.1",
          "transcript_support_level": null,
          "aa_start": 1499,
          "aa_end": null,
          "aa_length": 1509,
          "cds_start": 4495,
          "cds_end": null,
          "cds_length": 4530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365630.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 37,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4492G>C",
          "hgvs_p": "p.Ala1498Pro",
          "transcript": "NM_001375705.1",
          "protein_id": "NP_001362634.1",
          "transcript_support_level": null,
          "aa_start": 1498,
          "aa_end": null,
          "aa_length": 1508,
          "cds_start": 4492,
          "cds_end": null,
          "cds_length": 4527,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001375705.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 38,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4486G>C",
          "hgvs_p": "p.Ala1496Pro",
          "transcript": "NM_001400405.1",
          "protein_id": "NP_001387334.1",
          "transcript_support_level": null,
          "aa_start": 1496,
          "aa_end": null,
          "aa_length": 1506,
          "cds_start": 4486,
          "cds_end": null,
          "cds_length": 4521,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001400405.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 38,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4483G>C",
          "hgvs_p": "p.Ala1495Pro",
          "transcript": "NM_001365632.1",
          "protein_id": "NP_001352561.1",
          "transcript_support_level": null,
          "aa_start": 1495,
          "aa_end": null,
          "aa_length": 1505,
          "cds_start": 4483,
          "cds_end": null,
          "cds_length": 4518,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365632.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 38,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4483G>C",
          "hgvs_p": "p.Ala1495Pro",
          "transcript": "ENST00000912539.1",
          "protein_id": "ENSP00000582598.1",
          "transcript_support_level": null,
          "aa_start": 1495,
          "aa_end": null,
          "aa_length": 1505,
          "cds_start": 4483,
          "cds_end": null,
          "cds_length": 4518,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912539.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 37,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4462G>C",
          "hgvs_p": "p.Ala1488Pro",
          "transcript": "ENST00000912540.1",
          "protein_id": "ENSP00000582599.1",
          "transcript_support_level": null,
          "aa_start": 1488,
          "aa_end": null,
          "aa_length": 1498,
          "cds_start": 4462,
          "cds_end": null,
          "cds_length": 4497,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000912540.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 37,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4447G>C",
          "hgvs_p": "p.Ala1483Pro",
          "transcript": "NM_001365633.1",
          "protein_id": "NP_001352562.1",
          "transcript_support_level": null,
          "aa_start": 1483,
          "aa_end": null,
          "aa_length": 1493,
          "cds_start": 4447,
          "cds_end": null,
          "cds_length": 4482,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001365633.1"
        },
        {
          "aa_ref": "A",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 37,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CLASP2",
          "gene_hgnc_id": 17078,
          "hgvs_c": "c.4444G>C",
          "hgvs_p": "p.Ala1482Pro",
          "transcript": "NM_001365634.1",
          "protein_id": "NP_001352563.1",
          "transcript_support_level": null,
          "aa_start": 1482,
          "aa_end": null,
          "aa_length": 1492,
          "cds_start": 4444,
          "cds_end": null,
          "cds_length": 4479,
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      "dbsnp": "rs765282276",
      "frequency_reference_population": 0.0000024792732,
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      "allele_count_reference_population": 4,
      "gnomad_exomes_af": 0.00000205307,
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      "gnomad_exomes_ac": 3,
      "gnomad_genomes_ac": 1,
      "gnomad_exomes_homalt": 0,
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      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.13303706049919128,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.083,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1324,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.44,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 2.163,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001365628.1",
          "gene_symbol": "CLASP2",
          "hgnc_id": 17078,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.4573G>C",
          "hgvs_p": "p.Ala1525Pro"
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}