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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-42527411-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=42527411&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "3",
"pos": 42527411,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_004624.4",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.418G>T",
"hgvs_p": "p.Gly140Cys",
"transcript": "NM_004624.4",
"protein_id": "NP_004615.2",
"transcript_support_level": null,
"aa_start": 140,
"aa_end": null,
"aa_length": 457,
"cds_start": 418,
"cds_end": null,
"cds_length": 1374,
"cdna_start": 511,
"cdna_end": null,
"cdna_length": 2754,
"mane_select": "ENST00000325123.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.418G>T",
"hgvs_p": "p.Gly140Cys",
"transcript": "ENST00000325123.5",
"protein_id": "ENSP00000327246.4",
"transcript_support_level": 1,
"aa_start": 140,
"aa_end": null,
"aa_length": 457,
"cds_start": 418,
"cds_end": null,
"cds_length": 1374,
"cdna_start": 511,
"cdna_end": null,
"cdna_length": 2754,
"mane_select": "NM_004624.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.337G>T",
"hgvs_p": "p.Gly113Cys",
"transcript": "NM_001251885.2",
"protein_id": "NP_001238814.1",
"transcript_support_level": null,
"aa_start": 113,
"aa_end": null,
"aa_length": 430,
"cds_start": 337,
"cds_end": null,
"cds_length": 1293,
"cdna_start": 465,
"cdna_end": null,
"cdna_length": 2708,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.295G>T",
"hgvs_p": "p.Gly99Cys",
"transcript": "NM_001251882.2",
"protein_id": "NP_001238811.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 416,
"cds_start": 295,
"cds_end": null,
"cds_length": 1251,
"cdna_start": 919,
"cdna_end": null,
"cdna_length": 3162,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.295G>T",
"hgvs_p": "p.Gly99Cys",
"transcript": "ENST00000433647.5",
"protein_id": "ENSP00000394950.1",
"transcript_support_level": 2,
"aa_start": 99,
"aa_end": null,
"aa_length": 416,
"cds_start": 295,
"cds_end": null,
"cds_length": 1251,
"cdna_start": 919,
"cdna_end": null,
"cdna_length": 3161,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.274G>T",
"hgvs_p": "p.Gly92Cys",
"transcript": "NM_001251884.2",
"protein_id": "NP_001238813.1",
"transcript_support_level": null,
"aa_start": 92,
"aa_end": null,
"aa_length": 409,
"cds_start": 274,
"cds_end": null,
"cds_length": 1230,
"cdna_start": 402,
"cdna_end": null,
"cdna_length": 2645,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.274G>T",
"hgvs_p": "p.Gly92Cys",
"transcript": "ENST00000543411.5",
"protein_id": "ENSP00000445701.1",
"transcript_support_level": 2,
"aa_start": 92,
"aa_end": null,
"aa_length": 409,
"cds_start": 274,
"cds_end": null,
"cds_length": 1230,
"cdna_start": 433,
"cdna_end": null,
"cdna_length": 2681,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.418G>T",
"hgvs_p": "p.Gly140Cys",
"transcript": "ENST00000439731.5",
"protein_id": "ENSP00000403478.1",
"transcript_support_level": 3,
"aa_start": 140,
"aa_end": null,
"aa_length": 218,
"cds_start": 418,
"cds_end": null,
"cds_length": 657,
"cdna_start": 531,
"cdna_end": null,
"cdna_length": 770,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.295G>T",
"hgvs_p": "p.Gly99Cys",
"transcript": "ENST00000450274.5",
"protein_id": "ENSP00000415013.1",
"transcript_support_level": 3,
"aa_start": 99,
"aa_end": null,
"aa_length": 125,
"cds_start": 295,
"cds_end": null,
"cds_length": 380,
"cdna_start": 658,
"cdna_end": null,
"cdna_length": 743,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.415G>T",
"hgvs_p": "p.Gly139Cys",
"transcript": "XM_005265437.3",
"protein_id": "XP_005265494.1",
"transcript_support_level": null,
"aa_start": 139,
"aa_end": null,
"aa_length": 456,
"cds_start": 415,
"cds_end": null,
"cds_length": 1371,
"cdna_start": 508,
"cdna_end": null,
"cdna_length": 2751,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.277G>T",
"hgvs_p": "p.Gly93Cys",
"transcript": "XM_005265439.3",
"protein_id": "XP_005265496.1",
"transcript_support_level": null,
"aa_start": 93,
"aa_end": null,
"aa_length": 410,
"cds_start": 277,
"cds_end": null,
"cds_length": 1233,
"cdna_start": 405,
"cdna_end": null,
"cdna_length": 2648,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.418G>T",
"hgvs_p": "p.Gly140Cys",
"transcript": "XM_011534080.3",
"protein_id": "XP_011532382.1",
"transcript_support_level": null,
"aa_start": 140,
"aa_end": null,
"aa_length": 351,
"cds_start": 418,
"cds_end": null,
"cds_length": 1056,
"cdna_start": 511,
"cdna_end": null,
"cdna_length": 1266,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "C",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.415G>T",
"hgvs_p": "p.Gly139Cys",
"transcript": "XM_047448850.1",
"protein_id": "XP_047304806.1",
"transcript_support_level": null,
"aa_start": 139,
"aa_end": null,
"aa_length": 350,
"cds_start": 415,
"cds_end": null,
"cds_length": 1053,
"cdna_start": 508,
"cdna_end": null,
"cdna_length": 1263,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.*171G>T",
"hgvs_p": null,
"transcript": "ENST00000436487.5",
"protein_id": "ENSP00000393215.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1002,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.*174G>T",
"hgvs_p": null,
"transcript": "ENST00000443646.5",
"protein_id": "ENSP00000388479.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1505,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.*174G>T",
"hgvs_p": null,
"transcript": "ENST00000446673.5",
"protein_id": "ENSP00000396204.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 822,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.290G>T",
"hgvs_p": null,
"transcript": "ENST00000473575.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 778,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.511G>T",
"hgvs_p": null,
"transcript": "XR_007095725.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1025,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.511G>T",
"hgvs_p": null,
"transcript": "XR_940500.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1013,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.*171G>T",
"hgvs_p": null,
"transcript": "ENST00000436487.5",
"protein_id": "ENSP00000393215.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1002,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.*174G>T",
"hgvs_p": null,
"transcript": "ENST00000443646.5",
"protein_id": "ENSP00000388479.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1505,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "n.*174G>T",
"hgvs_p": null,
"transcript": "ENST00000446673.5",
"protein_id": "ENSP00000396204.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 822,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "VIPR1",
"gene_hgnc_id": 12694,
"hgvs_c": "c.26+1418G>T",
"hgvs_p": null,
"transcript": "NM_001251883.2",
"protein_id": "NP_001238812.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 247,
"cds_start": -4,
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{
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{
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],
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}
],
"message": null
}