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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 3-49098105-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=49098105&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 1,
"criteria": [
"PM2",
"BP4"
],
"effects": [
"missense_variant"
],
"gene_symbol": "QARS1",
"hgnc_id": 9751,
"hgvs_c": "c.2164G>T",
"hgvs_p": "p.Val722Leu",
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": 1,
"transcript": "NM_005051.3",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4",
"acmg_score": 1,
"allele_count_reference_population": 2,
"alphamissense_prediction": null,
"alphamissense_score": 0.1888,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.36,
"chr": "3",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not provided",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.30401408672332764,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 775,
"aa_ref": "V",
"aa_start": 722,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2449,
"cdna_start": 2188,
"cds_end": null,
"cds_length": 2328,
"cds_start": 2164,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "NM_005051.3",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2164G>T",
"hgvs_p": "p.Val722Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000306125.12",
"protein_coding": true,
"protein_id": "NP_005042.1",
"strand": false,
"transcript": "NM_005051.3",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 775,
"aa_ref": "V",
"aa_start": 722,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2449,
"cdna_start": 2188,
"cds_end": null,
"cds_length": 2328,
"cds_start": 2164,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000306125.12",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2164G>T",
"hgvs_p": "p.Val722Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_005051.3",
"protein_coding": true,
"protein_id": "ENSP00000307567.6",
"strand": false,
"transcript": "ENST00000306125.12",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 630,
"aa_ref": "V",
"aa_start": 577,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2362,
"cdna_start": 2108,
"cds_end": null,
"cds_length": 1893,
"cds_start": 1729,
"consequences": [
"missense_variant"
],
"exon_count": 23,
"exon_rank": 22,
"exon_rank_end": null,
"feature": "ENST00000464962.6",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.1729G>T",
"hgvs_p": "p.Val577Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000489011.1",
"strand": false,
"transcript": "ENST00000464962.6",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 816,
"aa_ref": "V",
"aa_start": 763,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2565,
"cdna_start": 2311,
"cds_end": null,
"cds_length": 2451,
"cds_start": 2287,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000965966.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2287G>T",
"hgvs_p": "p.Val763Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636025.1",
"strand": false,
"transcript": "ENST00000965966.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 785,
"aa_ref": "V",
"aa_start": 732,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2477,
"cdna_start": 2217,
"cds_end": null,
"cds_length": 2358,
"cds_start": 2194,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000965963.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2194G>T",
"hgvs_p": "p.Val732Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636022.1",
"strand": false,
"transcript": "ENST00000965963.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 774,
"aa_ref": "V",
"aa_start": 721,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2441,
"cdna_start": 2180,
"cds_end": null,
"cds_length": 2325,
"cds_start": 2161,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000870701.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2161G>T",
"hgvs_p": "p.Val721Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000540760.1",
"strand": false,
"transcript": "ENST00000870701.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 774,
"aa_ref": "V",
"aa_start": 721,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2448,
"cdna_start": 2188,
"cds_end": null,
"cds_length": 2325,
"cds_start": 2161,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000965961.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2161G>T",
"hgvs_p": "p.Val721Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636020.1",
"strand": false,
"transcript": "ENST00000965961.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 764,
"aa_ref": "V",
"aa_start": 711,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2416,
"cdna_start": 2155,
"cds_end": null,
"cds_length": 2295,
"cds_start": 2131,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "NM_001272073.2",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2131G>T",
"hgvs_p": "p.Val711Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001259002.1",
"strand": false,
"transcript": "NM_001272073.2",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 764,
"aa_ref": "V",
"aa_start": 711,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2412,
"cdna_start": 2156,
"cds_end": null,
"cds_length": 2295,
"cds_start": 2131,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000414533.5",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2131G>T",
"hgvs_p": "p.Val711Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000390015.1",
"strand": false,
"transcript": "ENST00000414533.5",
"transcript_support_level": 2
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 758,
"aa_ref": "V",
"aa_start": 705,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2400,
"cdna_start": 2139,
"cds_end": null,
"cds_length": 2277,
"cds_start": 2113,
"consequences": [
"missense_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000965960.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2113G>T",
"hgvs_p": "p.Val705Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636019.1",
"strand": false,
"transcript": "ENST00000965960.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 757,
"aa_ref": "V",
"aa_start": 704,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2383,
"cdna_start": 2129,
"cds_end": null,
"cds_length": 2274,
"cds_start": 2110,
"consequences": [
"missense_variant"
],
"exon_count": 23,
"exon_rank": 22,
"exon_rank_end": null,
"feature": "ENST00000965967.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2110G>T",
"hgvs_p": "p.Val704Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636026.1",
"strand": false,
"transcript": "ENST00000965967.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 751,
"aa_ref": "V",
"aa_start": 698,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2374,
"cdna_start": 2116,
"cds_end": null,
"cds_length": 2256,
"cds_start": 2092,
"consequences": [
"missense_variant"
],
"exon_count": 23,
"exon_rank": 22,
"exon_rank_end": null,
"feature": "ENST00000965965.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2092G>T",
"hgvs_p": "p.Val698Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636024.1",
"strand": false,
"transcript": "ENST00000965965.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 733,
"aa_ref": "V",
"aa_start": 680,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2310,
"cdna_start": 2062,
"cds_end": null,
"cds_length": 2202,
"cds_start": 2038,
"consequences": [
"missense_variant"
],
"exon_count": 23,
"exon_rank": 22,
"exon_rank_end": null,
"feature": "ENST00000965968.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2038G>T",
"hgvs_p": "p.Val680Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636027.1",
"strand": false,
"transcript": "ENST00000965968.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 713,
"aa_ref": "V",
"aa_start": 660,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2262,
"cdna_start": 2002,
"cds_end": null,
"cds_length": 2142,
"cds_start": 1978,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 21,
"exon_rank_end": null,
"feature": "ENST00000965962.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.1978G>T",
"hgvs_p": "p.Val660Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636021.1",
"strand": false,
"transcript": "ENST00000965962.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 704,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2236,
"cdna_start": null,
"cds_end": null,
"cds_length": 2115,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 22,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000913518.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2064+268G>T",
"hgvs_p": null,
"intron_rank": 21,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000583577.1",
"strand": false,
"transcript": "ENST00000913518.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 308,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1045,
"cdna_start": null,
"cds_end": null,
"cds_length": 927,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 11,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000965964.1",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.877-2026G>T",
"hgvs_p": null,
"intron_rank": 10,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000636023.1",
"strand": false,
"transcript": "ENST00000965964.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 253,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 859,
"cdna_start": null,
"cds_end": null,
"cds_length": 762,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 8,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000453392.5",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.711+87G>T",
"hgvs_p": null,
"intron_rank": 7,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000396326.1",
"strand": false,
"transcript": "ENST00000453392.5",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 91,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 334,
"cdna_start": null,
"cds_end": null,
"cds_length": 276,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 3,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000466179.2",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.248+445G>T",
"hgvs_p": null,
"intron_rank": 2,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000489462.1",
"strand": false,
"transcript": "ENST00000466179.2",
"transcript_support_level": 3
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 733,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2323,
"cdna_start": null,
"cds_end": null,
"cds_length": 2202,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 23,
"exon_rank": null,
"exon_rank_end": null,
"feature": "XM_017006965.3",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "c.2151+87G>T",
"hgvs_p": null,
"intron_rank": 22,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "XP_016862454.2",
"strand": false,
"transcript": "XM_017006965.3",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 2399,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 24,
"exon_rank": 23,
"exon_rank_end": null,
"feature": "ENST00000430182.5",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "n.*1812G>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000389823.1",
"strand": false,
"transcript": "ENST00000430182.5",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "retained_intron",
"canonical": false,
"cdna_end": null,
"cdna_length": 1317,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 6,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000459870.6",
"gene_hgnc_id": 9751,
"gene_symbol": "QARS1",
"hgvs_c": "n.1072G>T",
"hgvs_p": null,
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