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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-51984133-C-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=51984133&ref=C&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 51984133,
      "ref": "C",
      "alt": "G",
      "effect": "synonymous_variant",
      "transcript": "NM_001316331.2",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "NM_000666.3",
          "protein_id": "NP_000657.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000636358.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_000666.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000636358.2",
          "protein_id": "ENSP00000490149.1",
          "transcript_support_level": 1,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_000666.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000636358.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000404366.7",
          "protein_id": "ENSP00000384296.2",
          "transcript_support_level": 1,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000404366.7"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ABHD14A-ACY1",
          "gene_hgnc_id": 38856,
          "hgvs_c": "c.398-1074C>G",
          "hgvs_p": null,
          "transcript": "ENST00000463937.1",
          "protein_id": "ENSP00000420487.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000463937.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ABHD14A-ACY1",
          "gene_hgnc_id": 38856,
          "hgvs_c": "c.636C>G",
          "hgvs_p": "p.Arg212Arg",
          "transcript": "ENST00000637978.1",
          "protein_id": "ENSP00000490744.1",
          "transcript_support_level": 5,
          "aa_start": 212,
          "aa_end": null,
          "aa_length": 584,
          "cds_start": 636,
          "cds_end": null,
          "cds_length": 1756,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000637978.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ABHD14A-ACY1",
          "gene_hgnc_id": 38856,
          "hgvs_c": "c.339C>G",
          "hgvs_p": "p.Arg113Arg",
          "transcript": "NM_001316331.2",
          "protein_id": "NP_001303260.1",
          "transcript_support_level": null,
          "aa_start": 113,
          "aa_end": null,
          "aa_length": 498,
          "cds_start": 339,
          "cds_end": null,
          "cds_length": 1497,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001316331.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "NM_001198895.2",
          "protein_id": "NP_001185824.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001198895.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874798.1",
          "protein_id": "ENSP00000544857.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874798.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874801.1",
          "protein_id": "ENSP00000544860.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874801.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874809.1",
          "protein_id": "ENSP00000544868.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874809.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874811.1",
          "protein_id": "ENSP00000544870.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874811.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874812.1",
          "protein_id": "ENSP00000544871.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000874812.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000953767.1",
          "protein_id": "ENSP00000623826.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 408,
          "cds_start": 69,
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          "cds_length": 1227,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000953767.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874802.1",
          "protein_id": "ENSP00000544861.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 407,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1224,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000874802.1"
        },
        {
          "aa_ref": "R",
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          "strand": true,
          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
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          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874807.1",
          "protein_id": "ENSP00000544866.1",
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          "cds_start": 69,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000874807.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874813.1",
          "protein_id": "ENSP00000544872.1",
          "transcript_support_level": null,
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          "aa_length": 407,
          "cds_start": 69,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000874813.1"
        },
        {
          "aa_ref": "R",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874815.1",
          "protein_id": "ENSP00000544874.1",
          "transcript_support_level": null,
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        {
          "aa_ref": "R",
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          "protein_coding": true,
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          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
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          "protein_id": "ENSP00000544864.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000874805.1"
        },
        {
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          "strand": true,
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          "intron_rank": null,
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          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
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          "protein_id": "ENSP00000623827.1",
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          "biotype": "protein_coding",
          "feature": "ENST00000953768.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ACY1",
          "gene_hgnc_id": 177,
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg",
          "transcript": "ENST00000874808.1",
          "protein_id": "ENSP00000544867.1",
          "transcript_support_level": null,
          "aa_start": 23,
          "aa_end": null,
          "aa_length": 402,
          "cds_start": 69,
          "cds_end": null,
          "cds_length": 1209,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000874808.1"
        },
        {
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      "dbsnp": "rs34017492",
      "frequency_reference_population": 0.0029814274,
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      "allele_count_reference_population": 4812,
      "gnomad_exomes_af": 0.00299393,
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      "gnomad_exomes_ac": 4376,
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      "gnomad_exomes_homalt": 29,
      "gnomad_genomes_homalt": 1,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.5400000214576721,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": 0.0857,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.54,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.381,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
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      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -21,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -21,
          "benign_score": 21,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_001316331.2",
          "gene_symbol": "ABHD14A-ACY1",
          "hgnc_id": 38856,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "c.339C>G",
          "hgvs_p": "p.Arg113Arg"
        },
        {
          "score": -21,
          "benign_score": 21,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_000666.3",
          "gene_symbol": "ACY1",
          "hgnc_id": 177,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.69C>G",
          "hgvs_p": "p.Arg23Arg"
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Benign/Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:2 B:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Benign/Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}