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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-56558847-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=56558847&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 56558847,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant,splice_region_variant",
      "transcript": "NM_001353147.1",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "NM_001141947.3",
          "protein_id": "NP_001135419.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 948,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2847,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000394672.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001141947.3"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "ENST00000394672.8",
          "protein_id": "ENSP00000378167.3",
          "transcript_support_level": 1,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 948,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2847,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001141947.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000394672.8"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.-90G>A",
          "hgvs_p": null,
          "transcript": "ENST00000326595.11",
          "protein_id": "ENSP00000326050.7",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 914,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2745,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000326595.11"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.-90G>A",
          "hgvs_p": null,
          "transcript": "ENST00000326595.11",
          "protein_id": "ENSP00000326050.7",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 914,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2745,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000326595.11"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "splice_region_variant",
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "n.13G>A",
          "hgvs_p": null,
          "transcript": "ENST00000341455.10",
          "protein_id": "ENSP00000343840.6",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000341455.10"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "ENST00000932971.1",
          "protein_id": "ENSP00000603030.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 959,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2880,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932971.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "NM_001353147.1",
          "protein_id": "NP_001340076.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 954,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2865,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353147.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "ENST00000932966.1",
          "protein_id": "ENSP00000603025.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 954,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2865,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932966.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "NM_001353148.1",
          "protein_id": "NP_001340077.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 942,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2829,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353148.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "ENST00000888356.1",
          "protein_id": "ENSP00000558415.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 942,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2829,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888356.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "NM_001353149.1",
          "protein_id": "NP_001340078.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 941,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2826,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353149.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "ENST00000888358.1",
          "protein_id": "ENSP00000558417.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 941,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2826,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000888358.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "NM_001353150.1",
          "protein_id": "NP_001340079.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353150.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "ENST00000932968.1",
          "protein_id": "ENSP00000603027.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 925,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2778,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932968.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "ENST00000932967.1",
          "protein_id": "ENSP00000603026.1",
          "transcript_support_level": null,
          "aa_start": 5,
          "aa_end": null,
          "aa_length": 918,
          "cds_start": 13,
          "cds_end": null,
          "cds_length": 2757,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000932967.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.-61G>A",
          "hgvs_p": null,
          "transcript": "NM_001353151.1",
          "protein_id": "NP_001340080.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 915,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2748,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353151.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.-90G>A",
          "hgvs_p": null,
          "transcript": "NM_001012506.5",
          "protein_id": "NP_001012524.4",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 914,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2745,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001012506.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.-241G>A",
          "hgvs_p": null,
          "transcript": "NM_001353152.1",
          "protein_id": "NP_001340081.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 914,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2745,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353152.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.-90G>A",
          "hgvs_p": null,
          "transcript": "NM_001353153.1",
          "protein_id": "NP_001340082.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 914,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2745,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001353153.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant",
            "splice_region_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CCDC66",
          "gene_hgnc_id": 27709,
          "hgvs_c": "c.13G>A",
          "hgvs_p": "p.Asp5Asn",
          "transcript": "NM_001353154.1",
          "protein_id": "NP_001340083.1",
          "transcript_support_level": null,
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      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "custom_annotations": null
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  "message": null
}