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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-62745917-T-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=62745917&ref=T&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 62745917,
      "ref": "T",
      "alt": "C",
      "effect": "intron_variant",
      "transcript": "ENST00000383710.9",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "NM_003716.4",
          "protein_id": "NP_003707.2",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1353,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4062,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5507,
          "mane_select": "ENST00000383710.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "ENST00000383710.9",
          "protein_id": "ENSP00000373215.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1353,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4062,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5507,
          "mane_select": "NM_003716.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "ENST00000612439.4",
          "protein_id": "ENSP00000484365.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1344,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4035,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5455,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "ENST00000283269.13",
          "protein_id": "ENSP00000283269.9",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1314,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3945,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4591,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "ENST00000357948.7",
          "protein_id": "ENSP00000350632.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1274,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3825,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5190,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "NM_001438347.1",
          "protein_id": "NP_001425276.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1373,
          "cds_start": -4,
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          "cds_length": 4122,
          "cdna_start": null,
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          "cdna_length": 5567,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 30,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "NM_001438348.1",
          "protein_id": "NP_001425277.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1369,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4110,
          "cdna_start": null,
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          "cdna_length": 5555,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "NM_001438349.1",
          "protein_id": "NP_001425278.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1357,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 4074,
          "cdna_start": null,
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          "cdna_length": 5519,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 28,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "CADPS",
          "gene_hgnc_id": 1426,
          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "NM_001437891.1",
          "protein_id": "NP_001424820.1",
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        {
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          "gene_symbol": "CADPS",
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          "hgvs_c": "c.888+7524A>G",
          "hgvs_p": null,
          "transcript": "NM_001438350.1",
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          "gene_symbol": "CADPS",
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