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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-93877018-GAC-AAA (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=93877018&ref=GAC&alt=AAA&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PP2"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "PROS1",
          "hgnc_id": 9456,
          "hgvs_c": "c.1912_1914delGTCinsTTT",
          "hgvs_p": "p.Val638Phe",
          "inheritance_mode": "AD,AR,SD",
          "pathogenic_score": 1,
          "score": 1,
          "transcript": "NM_001314077.2",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PP2",
      "acmg_score": 1,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "AAA",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "3",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 676,
          "aa_ref": "V",
          "aa_start": 606,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3372,
          "cdna_start": 1965,
          "cds_end": null,
          "cds_length": 2031,
          "cds_start": 1816,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_000313.4",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1816_1818delGTCinsTTT",
          "hgvs_p": "p.Val606Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000394236.9",
          "protein_coding": true,
          "protein_id": "NP_000304.2",
          "strand": false,
          "transcript": "NM_000313.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 676,
          "aa_ref": "V",
          "aa_start": 606,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3372,
          "cdna_start": 1965,
          "cds_end": null,
          "cds_length": 2031,
          "cds_start": 1816,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000394236.9",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1816_1818delGTCinsTTT",
          "hgvs_p": "p.Val606Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_000313.4",
          "protein_coding": true,
          "protein_id": "ENSP00000377783.3",
          "strand": false,
          "transcript": "ENST00000394236.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 661,
          "aa_ref": "V",
          "aa_start": 591,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3188,
          "cdna_start": 1921,
          "cds_end": null,
          "cds_length": 1986,
          "cds_start": 1771,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000407433.6",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1771_1773delGTCinsTTT",
          "hgvs_p": "p.Val591Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000385794.2",
          "strand": false,
          "transcript": "ENST00000407433.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 708,
          "aa_ref": "V",
          "aa_start": 638,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3468,
          "cdna_start": 2061,
          "cds_end": null,
          "cds_length": 2127,
          "cds_start": 1912,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001314077.2",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1912_1914delGTCinsTTT",
          "hgvs_p": "p.Val638Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001301006.1",
          "strand": false,
          "transcript": "NM_001314077.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 708,
          "aa_ref": "V",
          "aa_start": 638,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3432,
          "cdna_start": 2098,
          "cds_end": null,
          "cds_length": 2127,
          "cds_start": 1912,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000650591.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1912_1914delGTCinsTTT",
          "hgvs_p": "p.Val638Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000497376.1",
          "strand": false,
          "transcript": "ENST00000650591.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 693,
          "aa_ref": "V",
          "aa_start": 623,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3337,
          "cdna_start": 1993,
          "cds_end": null,
          "cds_length": 2082,
          "cds_start": 1867,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869621.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1867_1869delGTCinsTTT",
          "hgvs_p": "p.Val623Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539680.1",
          "strand": false,
          "transcript": "ENST00000869621.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 681,
          "aa_ref": "V",
          "aa_start": 611,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3325,
          "cdna_start": 1980,
          "cds_end": null,
          "cds_length": 2046,
          "cds_start": 1831,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000948247.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1831_1833delGTCinsTTT",
          "hgvs_p": "p.Val611Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000618306.1",
          "strand": false,
          "transcript": "ENST00000948247.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 676,
          "aa_ref": "V",
          "aa_start": 606,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2398,
          "cdna_start": 1902,
          "cds_end": null,
          "cds_length": 2031,
          "cds_start": 1816,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000348974.5",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1816_1818delGTCinsTTT",
          "hgvs_p": "p.Val606Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000330021.7",
          "strand": false,
          "transcript": "ENST00000348974.5",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 674,
          "aa_ref": "V",
          "aa_start": 604,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3299,
          "cdna_start": 1948,
          "cds_end": null,
          "cds_length": 2025,
          "cds_start": 1810,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000948248.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1810_1812delGTCinsTTT",
          "hgvs_p": "p.Val604Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000618307.1",
          "strand": false,
          "transcript": "ENST00000948248.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 673,
          "aa_ref": "V",
          "aa_start": 603,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3266,
          "cdna_start": 1921,
          "cds_end": null,
          "cds_length": 2022,
          "cds_start": 1807,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869623.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1807_1809delGTCinsTTT",
          "hgvs_p": "p.Val603Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539682.1",
          "strand": false,
          "transcript": "ENST00000869623.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 662,
          "aa_ref": "V",
          "aa_start": 592,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3436,
          "cdna_start": 2102,
          "cds_end": null,
          "cds_length": 1989,
          "cds_start": 1774,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000648853.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1774_1776delGTCinsTTT",
          "hgvs_p": "p.Val592Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000497262.1",
          "strand": false,
          "transcript": "ENST00000648853.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 661,
          "aa_ref": "V",
          "aa_start": 591,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3283,
          "cdna_start": 1871,
          "cds_end": null,
          "cds_length": 1986,
          "cds_start": 1771,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869617.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1771_1773delGTCinsTTT",
          "hgvs_p": "p.Val591Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539676.1",
          "strand": false,
          "transcript": "ENST00000869617.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 647,
          "aa_ref": "V",
          "aa_start": 577,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3214,
          "cdna_start": 1870,
          "cds_end": null,
          "cds_length": 1944,
          "cds_start": 1729,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869620.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1729_1731delGTCinsTTT",
          "hgvs_p": "p.Val577Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539679.1",
          "strand": false,
          "transcript": "ENST00000869620.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 632,
          "aa_ref": "V",
          "aa_start": 562,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3177,
          "cdna_start": 1833,
          "cds_end": null,
          "cds_length": 1899,
          "cds_start": 1684,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869619.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1684_1686delGTCinsTTT",
          "hgvs_p": "p.Val562Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539678.1",
          "strand": false,
          "transcript": "ENST00000869619.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 632,
          "aa_ref": "V",
          "aa_start": 562,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3238,
          "cdna_start": 1893,
          "cds_end": null,
          "cds_length": 1899,
          "cds_start": 1684,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000948246.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1684_1686delGTCinsTTT",
          "hgvs_p": "p.Val562Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000618305.1",
          "strand": false,
          "transcript": "ENST00000948246.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 623,
          "aa_ref": "V",
          "aa_start": 553,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3106,
          "cdna_start": 1757,
          "cds_end": null,
          "cds_length": 1872,
          "cds_start": 1657,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869625.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1657_1659delGTCinsTTT",
          "hgvs_p": "p.Val553Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539684.1",
          "strand": false,
          "transcript": "ENST00000869625.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 620,
          "aa_ref": "V",
          "aa_start": 550,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3234,
          "cdna_start": 1827,
          "cds_end": null,
          "cds_length": 1863,
          "cds_start": 1648,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869615.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1648_1650delGTCinsTTT",
          "hgvs_p": "p.Val550Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539674.1",
          "strand": false,
          "transcript": "ENST00000869615.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 615,
          "aa_ref": "V",
          "aa_start": 545,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3378,
          "cdna_start": 1973,
          "cds_end": null,
          "cds_length": 1848,
          "cds_start": 1633,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869614.1",
          "gene_hgnc_id": 9456,
          "gene_symbol": "PROS1",
          "hgvs_c": "c.1633_1635delGTCinsTTT",
          "hgvs_p": "p.Val545Phe",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000539673.1",
          "strand": false,
          "transcript": "ENST00000869614.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "F",
          "aa_end": null,
          "aa_length": 591,
          "aa_ref": "V",
          "aa_start": 521,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3030,
          "cdna_start": 1681,
          "cds_end": null,
          "cds_length": 1776,
          "cds_start": 1561,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000869622.1",
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.