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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-9906747-T-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=9906747&ref=T&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 9906747,
      "ref": "T",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_153483.2",
      "consequences": [
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "NM_153480.2",
          "protein_id": "NP_705613.1",
          "transcript_support_level": null,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 667,
          "cds_start": 408,
          "cds_end": null,
          "cds_length": 2004,
          "cdna_start": 493,
          "cdna_end": null,
          "cdna_length": 2679,
          "mane_select": "ENST00000383814.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_153480.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "ENST00000383814.8",
          "protein_id": "ENSP00000373325.3",
          "transcript_support_level": 1,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 667,
          "cds_start": 408,
          "cds_end": null,
          "cds_length": 2004,
          "cdna_start": 493,
          "cdna_end": null,
          "cdna_length": 2679,
          "mane_select": "NM_153480.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000383814.8"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.507T>A",
          "hgvs_p": "p.His169Gln",
          "transcript": "ENST00000421412.5",
          "protein_id": "ENSP00000404916.1",
          "transcript_support_level": 1,
          "aa_start": 169,
          "aa_end": null,
          "aa_length": 700,
          "cds_start": 507,
          "cds_end": null,
          "cds_length": 2103,
          "cdna_start": 525,
          "cdna_end": null,
          "cdna_length": 2158,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000421412.5"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.528T>A",
          "hgvs_p": "p.His176Gln",
          "transcript": "NM_153483.2",
          "protein_id": "NP_705616.2",
          "transcript_support_level": null,
          "aa_start": 176,
          "aa_end": null,
          "aa_length": 707,
          "cds_start": 528,
          "cds_end": null,
          "cds_length": 2124,
          "cdna_start": 532,
          "cdna_end": null,
          "cdna_length": 2723,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_153483.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.174T>A",
          "hgvs_p": "p.His58Gln",
          "transcript": "ENST00000865435.1",
          "protein_id": "ENSP00000535494.1",
          "transcript_support_level": null,
          "aa_start": 58,
          "aa_end": null,
          "aa_length": 589,
          "cds_start": 174,
          "cds_end": null,
          "cds_length": 1770,
          "cdna_start": 257,
          "cdna_end": null,
          "cdna_length": 2448,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000865435.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.60T>A",
          "hgvs_p": "p.His20Gln",
          "transcript": "NM_153481.2",
          "protein_id": "NP_705614.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
          "aa_length": 551,
          "cds_start": 60,
          "cds_end": null,
          "cds_length": 1656,
          "cdna_start": 357,
          "cdna_end": null,
          "cdna_length": 2543,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_153481.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "NM_001193380.2",
          "protein_id": "NP_001180309.1",
          "transcript_support_level": null,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 533,
          "cds_start": 408,
          "cds_end": null,
          "cds_length": 1602,
          "cdna_start": 493,
          "cdna_end": null,
          "cdna_length": 2752,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001193380.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "ENST00000454190.6",
          "protein_id": "ENSP00000388086.2",
          "transcript_support_level": 2,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 533,
          "cds_start": 408,
          "cds_end": null,
          "cds_length": 1602,
          "cdna_start": 493,
          "cdna_end": null,
          "cdna_length": 2757,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000454190.6"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.288T>A",
          "hgvs_p": "p.His96Gln",
          "transcript": "ENST00000454992.1",
          "protein_id": "ENSP00000400768.1",
          "transcript_support_level": 4,
          "aa_start": 96,
          "aa_end": null,
          "aa_length": 172,
          "cds_start": 288,
          "cds_end": null,
          "cds_length": 520,
          "cdna_start": 339,
          "cdna_end": null,
          "cdna_length": 571,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000454992.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_047447458.1",
          "protein_id": "XP_047303414.1",
          "transcript_support_level": null,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 667,
          "cds_start": 408,
          "cds_end": null,
          "cds_length": 2004,
          "cdna_start": 541,
          "cdna_end": null,
          "cdna_length": 2732,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047447458.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_047447459.1",
          "protein_id": "XP_047303415.1",
          "transcript_support_level": null,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 667,
          "cds_start": 408,
          "cds_end": null,
          "cds_length": 2004,
          "cdna_start": 412,
          "cdna_end": null,
          "cdna_length": 2603,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047447459.1"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.288T>A",
          "hgvs_p": "p.His96Gln",
          "transcript": "XM_011533361.4",
          "protein_id": "XP_011531663.2",
          "transcript_support_level": null,
          "aa_start": 96,
          "aa_end": null,
          "aa_length": 627,
          "cds_start": 288,
          "cds_end": null,
          "cds_length": 1884,
          "cdna_start": 422,
          "cdna_end": null,
          "cdna_length": 2613,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011533361.4"
        },
        {
          "aa_ref": "H",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.60T>A",
          "hgvs_p": "p.His20Gln",
          "transcript": "XM_006712976.2",
          "protein_id": "XP_006713039.1",
          "transcript_support_level": null,
          "aa_start": 20,
          "aa_end": null,
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          "cds_start": 60,
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          "cdna_start": 477,
          "cdna_end": null,
          "cdna_length": 2668,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_047447460.1",
          "protein_id": "XP_047303416.1",
          "transcript_support_level": null,
          "aa_start": 136,
          "aa_end": null,
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          "cds_start": 408,
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          "cdna_start": 532,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_024453350.2",
          "protein_id": "XP_024309118.1",
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          "aa_length": 506,
          "cds_start": 408,
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          "cdna_start": 530,
          "cdna_end": null,
          "cdna_length": 3335,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_024453350.2"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_011533362.3",
          "protein_id": "XP_011531664.1",
          "transcript_support_level": null,
          "aa_start": 136,
          "aa_end": null,
          "aa_length": 457,
          "cds_start": 408,
          "cds_end": null,
          "cds_length": 1374,
          "cdna_start": 531,
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          "cdna_length": 2567,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_011533362.3"
        },
        {
          "aa_ref": "H",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_047447462.1",
          "protein_id": "XP_047303418.1",
          "transcript_support_level": null,
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          "aa_end": null,
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        },
        {
          "aa_ref": "H",
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          "protein_coding": true,
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          ],
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          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_011533363.3",
          "protein_id": "XP_011531665.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "H",
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          "protein_coding": true,
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          ],
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          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "c.408T>A",
          "hgvs_p": "p.His136Gln",
          "transcript": "XM_011533364.3",
          "protein_id": "XP_011531666.1",
          "transcript_support_level": null,
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          "cds_start": 408,
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          "cdna_start": 475,
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          "cdna_length": 1300,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011533364.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RE",
          "gene_hgnc_id": 18439,
          "hgvs_c": "n.392T>A",
          "hgvs_p": null,
          "transcript": "ENST00000383815.7",
          "protein_id": "ENSP00000373326.3",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
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          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2808,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000383815.7"
        },
        {
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        {
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        {
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        {
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          "hgvs_c": "n.475T>A",
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          "cdna_length": 1434,
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          "biotype": "pseudogene",
          "feature": "XR_940382.4"
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      ],
      "gene_symbol": "IL17RE",
      "gene_hgnc_id": 18439,
      "dbsnp": "rs762108222",
      "frequency_reference_population": 0.000009576618,
      "hom_count_reference_population": 0,
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      "gnomad_exomes_af": 0.00000957662,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 14,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.08573004603385925,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.019999999552965164,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.062,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1313,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.57,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 0.416,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.02,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_153483.2",
          "gene_symbol": "IL17RE",
          "hgnc_id": 18439,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.528T>A",
          "hgvs_p": "p.His176Gln"
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.