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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 3-9933582-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=3&pos=9933582&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "3",
      "pos": 9933582,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_153460.4",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2152G>A",
          "hgvs_p": "p.Asp718Asn",
          "transcript": "NM_153460.4",
          "protein_id": "NP_703190.2",
          "transcript_support_level": null,
          "aa_start": 718,
          "aa_end": null,
          "aa_length": 720,
          "cds_start": 2152,
          "cds_end": null,
          "cds_length": 2163,
          "cdna_start": 2370,
          "cdna_end": null,
          "cdna_length": 2409,
          "mane_select": "ENST00000403601.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2152G>A",
          "hgvs_p": "p.Asp718Asn",
          "transcript": "ENST00000403601.8",
          "protein_id": "ENSP00000384969.3",
          "transcript_support_level": 1,
          "aa_start": 718,
          "aa_end": null,
          "aa_length": 720,
          "cds_start": 2152,
          "cds_end": null,
          "cds_length": 2163,
          "cdna_start": 2370,
          "cdna_end": null,
          "cdna_length": 2409,
          "mane_select": "NM_153460.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2113G>A",
          "hgvs_p": "p.Asp705Asn",
          "transcript": "ENST00000413608.2",
          "protein_id": "ENSP00000396064.1",
          "transcript_support_level": 1,
          "aa_start": 705,
          "aa_end": null,
          "aa_length": 707,
          "cds_start": 2113,
          "cds_end": null,
          "cds_length": 2124,
          "cdna_start": 2113,
          "cdna_end": null,
          "cdna_length": 2147,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2107G>A",
          "hgvs_p": "p.Asp703Asn",
          "transcript": "ENST00000383812.9",
          "protein_id": "ENSP00000373323.4",
          "transcript_support_level": 1,
          "aa_start": 703,
          "aa_end": null,
          "aa_length": 705,
          "cds_start": 2107,
          "cds_end": null,
          "cds_length": 2118,
          "cdna_start": 2349,
          "cdna_end": null,
          "cdna_length": 2388,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2062G>A",
          "hgvs_p": "p.Asp688Asn",
          "transcript": "ENST00000416074.6",
          "protein_id": "ENSP00000395315.3",
          "transcript_support_level": 1,
          "aa_start": 688,
          "aa_end": null,
          "aa_length": 690,
          "cds_start": 2062,
          "cds_end": null,
          "cds_length": 2073,
          "cdna_start": 2304,
          "cdna_end": null,
          "cdna_length": 2342,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2056G>A",
          "hgvs_p": "p.Asp686Asn",
          "transcript": "ENST00000455057.5",
          "protein_id": "ENSP00000407894.1",
          "transcript_support_level": 1,
          "aa_start": 686,
          "aa_end": null,
          "aa_length": 688,
          "cds_start": 2056,
          "cds_end": null,
          "cds_length": 2067,
          "cdna_start": 2209,
          "cdna_end": null,
          "cdna_length": 2244,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "n.*1845G>A",
          "hgvs_p": null,
          "transcript": "ENST00000451271.5",
          "protein_id": "ENSP00000412777.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2284,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.*584G>A",
          "hgvs_p": null,
          "transcript": "ENST00000483582.5",
          "protein_id": "ENSP00000512844.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 538,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 1617,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2467,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "n.*1845G>A",
          "hgvs_p": null,
          "transcript": "ENST00000451271.5",
          "protein_id": "ENSP00000412777.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2284,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": 16,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000288550",
          "gene_hgnc_id": null,
          "hgvs_c": "n.1399+879G>A",
          "hgvs_p": null,
          "transcript": "ENST00000683484.1",
          "protein_id": "ENSP00000507040.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3402,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2365G>A",
          "hgvs_p": "p.Asp789Asn",
          "transcript": "NM_153461.4",
          "protein_id": "NP_703191.2",
          "transcript_support_level": null,
          "aa_start": 789,
          "aa_end": null,
          "aa_length": 791,
          "cds_start": 2365,
          "cds_end": null,
          "cds_length": 2376,
          "cdna_start": 2583,
          "cdna_end": null,
          "cdna_length": 2622,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2365G>A",
          "hgvs_p": "p.Asp789Asn",
          "transcript": "ENST00000295981.7",
          "protein_id": "ENSP00000295981.3",
          "transcript_support_level": 2,
          "aa_start": 789,
          "aa_end": null,
          "aa_length": 791,
          "cds_start": 2365,
          "cds_end": null,
          "cds_length": 2376,
          "cdna_start": 2583,
          "cdna_end": null,
          "cdna_length": 2621,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2113G>A",
          "hgvs_p": "p.Asp705Asn",
          "transcript": "NM_001203263.2",
          "protein_id": "NP_001190192.2",
          "transcript_support_level": null,
          "aa_start": 705,
          "aa_end": null,
          "aa_length": 707,
          "cds_start": 2113,
          "cds_end": null,
          "cds_length": 2124,
          "cdna_start": 2331,
          "cdna_end": null,
          "cdna_length": 2370,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2107G>A",
          "hgvs_p": "p.Asp703Asn",
          "transcript": "NM_032732.6",
          "protein_id": "NP_116121.3",
          "transcript_support_level": null,
          "aa_start": 703,
          "aa_end": null,
          "aa_length": 705,
          "cds_start": 2107,
          "cds_end": null,
          "cds_length": 2118,
          "cdna_start": 2325,
          "cdna_end": null,
          "cdna_length": 2364,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2074G>A",
          "hgvs_p": "p.Asp692Asn",
          "transcript": "NM_001367278.1",
          "protein_id": "NP_001354207.1",
          "transcript_support_level": null,
          "aa_start": 692,
          "aa_end": null,
          "aa_length": 694,
          "cds_start": 2074,
          "cds_end": null,
          "cds_length": 2085,
          "cdna_start": 2292,
          "cdna_end": null,
          "cdna_length": 2331,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2074G>A",
          "hgvs_p": "p.Asp692Asn",
          "transcript": "ENST00000696824.1",
          "protein_id": "ENSP00000512902.1",
          "transcript_support_level": null,
          "aa_start": 692,
          "aa_end": null,
          "aa_length": 694,
          "cds_start": 2074,
          "cds_end": null,
          "cds_length": 2085,
          "cdna_start": 2274,
          "cdna_end": null,
          "cdna_length": 2285,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2068G>A",
          "hgvs_p": "p.Asp690Asn",
          "transcript": "NM_001367280.1",
          "protein_id": "NP_001354209.1",
          "transcript_support_level": null,
          "aa_start": 690,
          "aa_end": null,
          "aa_length": 692,
          "cds_start": 2068,
          "cds_end": null,
          "cds_length": 2079,
          "cdna_start": 2286,
          "cdna_end": null,
          "cdna_length": 2325,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2068G>A",
          "hgvs_p": "p.Asp690Asn",
          "transcript": "ENST00000696816.1",
          "protein_id": "ENSP00000512897.1",
          "transcript_support_level": null,
          "aa_start": 690,
          "aa_end": null,
          "aa_length": 692,
          "cds_start": 2068,
          "cds_end": null,
          "cds_length": 2079,
          "cdna_start": 2270,
          "cdna_end": null,
          "cdna_length": 2281,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2065G>A",
          "hgvs_p": "p.Asp689Asn",
          "transcript": "ENST00000696825.1",
          "protein_id": "ENSP00000512903.1",
          "transcript_support_level": null,
          "aa_start": 689,
          "aa_end": null,
          "aa_length": 691,
          "cds_start": 2065,
          "cds_end": null,
          "cds_length": 2076,
          "cdna_start": 2265,
          "cdna_end": null,
          "cdna_length": 2276,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "IL17RC",
          "gene_hgnc_id": 18358,
          "hgvs_c": "c.2062G>A",
          "hgvs_p": "p.Asp688Asn",
          "transcript": "NM_001203264.2",
          "protein_id": "NP_001190193.2",
          "transcript_support_level": null,
          "aa_start": 688,
          "aa_end": null,
          "aa_length": 690,
          "cds_start": 2062,
          "cds_end": null,
          "cds_length": 2073,
          "cdna_start": 2280,
          "cdna_end": null,
          "cdna_length": 2319,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
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          "benign_score": 5,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BS1_Supporting"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000684493.1",
          "gene_symbol": "CRELD1",
          "hgnc_id": 14630,
          "effects": [
            "upstream_gene_variant"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.-290G>A",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": " 9, familial,Candidiasis,not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:2",
      "phenotype_combined": "Candidiasis, familial, 9|not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}