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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 4-113369734-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=113369734&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "4",
      "pos": 113369734,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "ENST00000357077.9",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 46,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11539G>A",
          "hgvs_p": "p.Val3847Ile",
          "transcript": "NM_001148.6",
          "protein_id": "NP_001139.3",
          "transcript_support_level": null,
          "aa_start": 3847,
          "aa_end": null,
          "aa_length": 3957,
          "cds_start": 11539,
          "cds_end": null,
          "cds_length": 11874,
          "cdna_start": 11615,
          "cdna_end": null,
          "cdna_length": 14215,
          "mane_select": "ENST00000357077.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 46,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11539G>A",
          "hgvs_p": "p.Val3847Ile",
          "transcript": "ENST00000357077.9",
          "protein_id": "ENSP00000349588.4",
          "transcript_support_level": 1,
          "aa_start": 3847,
          "aa_end": null,
          "aa_length": 3957,
          "cds_start": 11539,
          "cds_end": null,
          "cds_length": 11874,
          "cdna_start": 11615,
          "cdna_end": null,
          "cdna_length": 14215,
          "mane_select": "NM_001148.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11680G>A",
          "hgvs_p": "p.Val3894Ile",
          "transcript": "ENST00000506344.6",
          "protein_id": "ENSP00000422888.2",
          "transcript_support_level": 1,
          "aa_start": 3894,
          "aa_end": null,
          "aa_length": 4183,
          "cds_start": 11680,
          "cds_end": null,
          "cds_length": 12552,
          "cdna_start": 11930,
          "cdna_end": null,
          "cdna_length": 14898,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 42,
          "exon_rank_end": null,
          "exon_count": 45,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.5284G>A",
          "hgvs_p": "p.Val1762Ile",
          "transcript": "ENST00000394537.7",
          "protein_id": "ENSP00000378044.3",
          "transcript_support_level": 1,
          "aa_start": 1762,
          "aa_end": null,
          "aa_length": 1872,
          "cds_start": 5284,
          "cds_end": null,
          "cds_length": 5619,
          "cdna_start": 5337,
          "cdna_end": null,
          "cdna_length": 6313,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.5257G>A",
          "hgvs_p": "p.Val1753Ile",
          "transcript": "ENST00000506722.5",
          "protein_id": "ENSP00000421067.1",
          "transcript_support_level": 1,
          "aa_start": 1753,
          "aa_end": null,
          "aa_length": 1863,
          "cds_start": 5257,
          "cds_end": null,
          "cds_length": 5592,
          "cdna_start": 5452,
          "cdna_end": null,
          "cdna_length": 8051,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.2287G>A",
          "hgvs_p": "p.Val763Ile",
          "transcript": "ENST00000514960.5",
          "protein_id": "ENSP00000422853.1",
          "transcript_support_level": 1,
          "aa_start": 763,
          "aa_end": null,
          "aa_length": 965,
          "cds_start": 2287,
          "cds_end": null,
          "cds_length": 2898,
          "cdna_start": 2288,
          "cdna_end": null,
          "cdna_length": 5160,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.1966G>A",
          "hgvs_p": "p.Val656Ile",
          "transcript": "ENST00000510275.8",
          "protein_id": "ENSP00000421023.4",
          "transcript_support_level": 1,
          "aa_start": 656,
          "aa_end": null,
          "aa_length": 683,
          "cds_start": 1966,
          "cds_end": null,
          "cds_length": 2052,
          "cdna_start": 1966,
          "cdna_end": null,
          "cdna_length": 4305,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11680G>A",
          "hgvs_p": "p.Val3894Ile",
          "transcript": "NM_001386174.1",
          "protein_id": "NP_001373103.1",
          "transcript_support_level": null,
          "aa_start": 3894,
          "aa_end": null,
          "aa_length": 4183,
          "cds_start": 11680,
          "cds_end": null,
          "cds_length": 12552,
          "cdna_start": 11930,
          "cdna_end": null,
          "cdna_length": 14898,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11656G>A",
          "hgvs_p": "p.Val3886Ile",
          "transcript": "NM_001386175.1",
          "protein_id": "NP_001373104.1",
          "transcript_support_level": null,
          "aa_start": 3886,
          "aa_end": null,
          "aa_length": 4175,
          "cds_start": 11656,
          "cds_end": null,
          "cds_length": 12528,
          "cdna_start": 11906,
          "cdna_end": null,
          "cdna_length": 14874,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11377G>A",
          "hgvs_p": "p.Val3793Ile",
          "transcript": "ENST00000672209.1",
          "protein_id": "ENSP00000499982.1",
          "transcript_support_level": null,
          "aa_start": 3793,
          "aa_end": null,
          "aa_length": 3995,
          "cds_start": 11377,
          "cds_end": null,
          "cds_length": 11988,
          "cdna_start": 11576,
          "cdna_end": null,
          "cdna_length": 14932,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11620G>A",
          "hgvs_p": "p.Val3874Ile",
          "transcript": "ENST00000672240.1",
          "protein_id": "ENSP00000500548.1",
          "transcript_support_level": null,
          "aa_start": 3874,
          "aa_end": null,
          "aa_length": 3984,
          "cds_start": 11620,
          "cds_end": null,
          "cds_length": 11955,
          "cdna_start": 12213,
          "cdna_end": null,
          "cdna_length": 15298,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 46,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11584G>A",
          "hgvs_p": "p.Val3862Ile",
          "transcript": "ENST00000671971.1",
          "protein_id": "ENSP00000499832.1",
          "transcript_support_level": null,
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          "cds_start": 11584,
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          "cdna_start": 12177,
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        {
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          "exon_rank_end": null,
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          "hgvs_c": "c.11377G>A",
          "hgvs_p": "p.Val3793Ile",
          "transcript": "ENST00000673298.1",
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        {
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          "strand": true,
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          "intron_rank": null,
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          "gene_symbol": "ANK2",
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          "hgvs_c": "c.11377G>A",
          "hgvs_p": "p.Val3793Ile",
          "transcript": "ENST00000503423.6",
          "protein_id": "ENSP00000421011.2",
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        {
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          "gene_symbol": "ANK2",
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          "hgvs_c": "c.11305G>A",
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        {
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          "consequences": [
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          "exon_count": 45,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11485G>A",
          "hgvs_p": "p.Val3829Ile",
          "transcript": "ENST00000673363.1",
          "protein_id": "ENSP00000500539.1",
          "transcript_support_level": null,
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        {
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          "exon_count": 47,
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          "gene_symbol": "ANK2",
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          "hgvs_c": "c.11476G>A",
          "hgvs_p": "p.Val3826Ile",
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        {
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          "feature": null
        },
        {
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          "consequences": [
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          "exon_rank": 42,
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          "exon_count": 45,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11440G>A",
          "hgvs_p": "p.Val3814Ile",
          "transcript": "ENST00000672502.1",
          "protein_id": "ENSP00000499870.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 3924,
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          "cds_length": 11775,
          "cdna_start": 11647,
          "cdna_end": null,
          "cdna_length": 14732,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
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}