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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 4-113369789-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=113369789&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "4",
      "pos": 113369789,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "ENST00000357077.9",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 46,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11594A>G",
          "hgvs_p": "p.Asp3865Gly",
          "transcript": "NM_001148.6",
          "protein_id": "NP_001139.3",
          "transcript_support_level": null,
          "aa_start": 3865,
          "aa_end": null,
          "aa_length": 3957,
          "cds_start": 11594,
          "cds_end": null,
          "cds_length": 11874,
          "cdna_start": 11670,
          "cdna_end": null,
          "cdna_length": 14215,
          "mane_select": "ENST00000357077.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 46,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11594A>G",
          "hgvs_p": "p.Asp3865Gly",
          "transcript": "ENST00000357077.9",
          "protein_id": "ENSP00000349588.4",
          "transcript_support_level": 1,
          "aa_start": 3865,
          "aa_end": null,
          "aa_length": 3957,
          "cds_start": 11594,
          "cds_end": null,
          "cds_length": 11874,
          "cdna_start": 11670,
          "cdna_end": null,
          "cdna_length": 14215,
          "mane_select": "NM_001148.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11735A>G",
          "hgvs_p": "p.Asp3912Gly",
          "transcript": "ENST00000506344.6",
          "protein_id": "ENSP00000422888.2",
          "transcript_support_level": 1,
          "aa_start": 3912,
          "aa_end": null,
          "aa_length": 4183,
          "cds_start": 11735,
          "cds_end": null,
          "cds_length": 12552,
          "cdna_start": 11985,
          "cdna_end": null,
          "cdna_length": 14898,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 42,
          "exon_rank_end": null,
          "exon_count": 45,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.5339A>G",
          "hgvs_p": "p.Asp1780Gly",
          "transcript": "ENST00000394537.7",
          "protein_id": "ENSP00000378044.3",
          "transcript_support_level": 1,
          "aa_start": 1780,
          "aa_end": null,
          "aa_length": 1872,
          "cds_start": 5339,
          "cds_end": null,
          "cds_length": 5619,
          "cdna_start": 5392,
          "cdna_end": null,
          "cdna_length": 6313,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.5312A>G",
          "hgvs_p": "p.Asp1771Gly",
          "transcript": "ENST00000506722.5",
          "protein_id": "ENSP00000421067.1",
          "transcript_support_level": 1,
          "aa_start": 1771,
          "aa_end": null,
          "aa_length": 1863,
          "cds_start": 5312,
          "cds_end": null,
          "cds_length": 5592,
          "cdna_start": 5507,
          "cdna_end": null,
          "cdna_length": 8051,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.2342A>G",
          "hgvs_p": "p.Asp781Gly",
          "transcript": "ENST00000514960.5",
          "protein_id": "ENSP00000422853.1",
          "transcript_support_level": 1,
          "aa_start": 781,
          "aa_end": null,
          "aa_length": 965,
          "cds_start": 2342,
          "cds_end": null,
          "cds_length": 2898,
          "cdna_start": 2343,
          "cdna_end": null,
          "cdna_length": 5160,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 14,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.2021A>G",
          "hgvs_p": "p.Asp674Gly",
          "transcript": "ENST00000510275.8",
          "protein_id": "ENSP00000421023.4",
          "transcript_support_level": 1,
          "aa_start": 674,
          "aa_end": null,
          "aa_length": 683,
          "cds_start": 2021,
          "cds_end": null,
          "cds_length": 2052,
          "cdna_start": 2021,
          "cdna_end": null,
          "cdna_length": 4305,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 45,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11735A>G",
          "hgvs_p": "p.Asp3912Gly",
          "transcript": "NM_001386174.1",
          "protein_id": "NP_001373103.1",
          "transcript_support_level": null,
          "aa_start": 3912,
          "aa_end": null,
          "aa_length": 4183,
          "cds_start": 11735,
          "cds_end": null,
          "cds_length": 12552,
          "cdna_start": 11985,
          "cdna_end": null,
          "cdna_length": 14898,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11711A>G",
          "hgvs_p": "p.Asp3904Gly",
          "transcript": "NM_001386175.1",
          "protein_id": "NP_001373104.1",
          "transcript_support_level": null,
          "aa_start": 3904,
          "aa_end": null,
          "aa_length": 4175,
          "cds_start": 11711,
          "cds_end": null,
          "cds_length": 12528,
          "cdna_start": 11961,
          "cdna_end": null,
          "cdna_length": 14874,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11432A>G",
          "hgvs_p": "p.Asp3811Gly",
          "transcript": "ENST00000672209.1",
          "protein_id": "ENSP00000499982.1",
          "transcript_support_level": null,
          "aa_start": 3811,
          "aa_end": null,
          "aa_length": 3995,
          "cds_start": 11432,
          "cds_end": null,
          "cds_length": 11988,
          "cdna_start": 11631,
          "cdna_end": null,
          "cdna_length": 14932,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11675A>G",
          "hgvs_p": "p.Asp3892Gly",
          "transcript": "ENST00000672240.1",
          "protein_id": "ENSP00000500548.1",
          "transcript_support_level": null,
          "aa_start": 3892,
          "aa_end": null,
          "aa_length": 3984,
          "cds_start": 11675,
          "cds_end": null,
          "cds_length": 11955,
          "cdna_start": 12268,
          "cdna_end": null,
          "cdna_length": 15298,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 46,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11639A>G",
          "hgvs_p": "p.Asp3880Gly",
          "transcript": "ENST00000671971.1",
          "protein_id": "ENSP00000499832.1",
          "transcript_support_level": null,
          "aa_start": 3880,
          "aa_end": null,
          "aa_length": 3972,
          "cds_start": 11639,
          "cds_end": null,
          "cds_length": 11919,
          "cdna_start": 12232,
          "cdna_end": null,
          "cdna_length": 15262,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11432A>G",
          "hgvs_p": "p.Asp3811Gly",
          "transcript": "ENST00000673298.1",
          "protein_id": "ENSP00000500245.1",
          "transcript_support_level": null,
          "aa_start": 3811,
          "aa_end": null,
          "aa_length": 3964,
          "cds_start": 11432,
          "cds_end": null,
          "cds_length": 11895,
          "cdna_start": 11631,
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          "cdna_length": 14363,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
          "exon_rank_end": null,
          "exon_count": 46,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11432A>G",
          "hgvs_p": "p.Asp3811Gly",
          "transcript": "ENST00000503423.6",
          "protein_id": "ENSP00000421011.2",
          "transcript_support_level": 5,
          "aa_start": 3811,
          "aa_end": null,
          "aa_length": 3961,
          "cds_start": 11432,
          "cds_end": null,
          "cds_length": 11886,
          "cdna_start": 11631,
          "cdna_end": null,
          "cdna_length": 12641,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 41,
          "exon_rank_end": null,
          "exon_count": 45,
          "intron_rank": null,
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          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11360A>G",
          "hgvs_p": "p.Asp3787Gly",
          "transcript": "NM_001386142.1",
          "protein_id": "NP_001373071.1",
          "transcript_support_level": null,
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          "aa_length": 3940,
          "cds_start": 11360,
          "cds_end": null,
          "cds_length": 11823,
          "cdna_start": 11559,
          "cdna_end": null,
          "cdna_length": 14287,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 42,
          "exon_rank_end": null,
          "exon_count": 45,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11540A>G",
          "hgvs_p": "p.Asp3847Gly",
          "transcript": "ENST00000673363.1",
          "protein_id": "ENSP00000500539.1",
          "transcript_support_level": null,
          "aa_start": 3847,
          "aa_end": null,
          "aa_length": 3939,
          "cds_start": 11540,
          "cds_end": null,
          "cds_length": 11820,
          "cdna_start": 12133,
          "cdna_end": null,
          "cdna_length": 15163,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11531A>G",
          "hgvs_p": "p.Asp3844Gly",
          "transcript": "ENST00000672830.1",
          "protein_id": "ENSP00000500222.1",
          "transcript_support_level": null,
          "aa_start": 3844,
          "aa_end": null,
          "aa_length": 3936,
          "cds_start": 11531,
          "cds_end": null,
          "cds_length": 11811,
          "cdna_start": 11741,
          "cdna_end": null,
          "cdna_length": 14771,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 43,
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          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11432A>G",
          "hgvs_p": "p.Asp3811Gly",
          "transcript": "ENST00000672068.1",
          "protein_id": "ENSP00000499902.1",
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          "aa_start": 3811,
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          "aa_length": 3934,
          "cds_start": 11432,
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          "cdna_start": 11631,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 42,
          "exon_rank_end": null,
          "exon_count": 45,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11495A>G",
          "hgvs_p": "p.Asp3832Gly",
          "transcript": "ENST00000264366.10",
          "protein_id": "ENSP00000264366.6",
          "transcript_support_level": 5,
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          "cds_length": 11775,
          "cdna_start": 11495,
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          "cdna_length": 11775,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 42,
          "exon_rank_end": null,
          "exon_count": 45,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ANK2",
          "gene_hgnc_id": 493,
          "hgvs_c": "c.11495A>G",
          "hgvs_p": "p.Asp3832Gly",
          "transcript": "ENST00000672502.1",
          "protein_id": "ENSP00000499870.1",
          "transcript_support_level": null,
          "aa_start": 3832,
          "aa_end": null,
          "aa_length": 3924,
          "cds_start": 11495,
          "cds_end": null,
          "cds_length": 11775,
          "cdna_start": 11702,
          "cdna_end": null,
          "cdna_length": 14732,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 44,
          "exon_rank_end": null,
          "exon_count": 47,
          "intron_rank": null,
          "intron_rank_end": null,
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      "bayesdelnoaf_score": 0.03,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "phylop100way_score": 3.655,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
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      "acmg_classification": "Benign",
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      "acmg_by_gene": [
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      "clinvar_disease": "Cardiovascular phenotype,Long QT syndrome,not provided",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:3 LB:2",
      "phenotype_combined": "not provided|Long QT syndrome|Cardiovascular phenotype",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
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  "message": null
}