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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-1315475-AGC-TCT (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=1315475&ref=AGC&alt=TCT&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PP3"
],
"effects": [
"synonymous_variant"
],
"gene_symbol": "MAEA",
"hgnc_id": 13731,
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"inheritance_mode": "AD",
"pathogenic_score": 1,
"score": 1,
"transcript": "NM_001017405.3",
"verdict": "Uncertain_significance"
}
],
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PP3",
"acmg_score": 1,
"allele_count_reference_population": 0,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "TCT",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": null,
"bayesdelnoaf_score": null,
"chr": "4",
"clinvar_classification": "",
"clinvar_disease": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"computational_prediction_selected": null,
"computational_score_selected": null,
"computational_source_selected": null,
"consequences": [
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 396,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2182,
"cdna_start": 354,
"cds_end": null,
"cds_length": 1191,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001017405.3",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000303400.9",
"protein_coding": true,
"protein_id": "NP_001017405.1",
"strand": true,
"transcript": "NM_001017405.3",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 396,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2182,
"cdna_start": 354,
"cds_end": null,
"cds_length": 1191,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000303400.9",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001017405.3",
"protein_coding": true,
"protein_id": "ENSP00000302830.4",
"strand": true,
"transcript": "ENST00000303400.9",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 1182,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 5,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000503693.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "n.337_339delAGCinsTCT",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": true,
"transcript": "ENST00000503693.1",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1001,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 7,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000509531.5",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "n.331_333delAGCinsTCT",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000426966.1",
"strand": true,
"transcript": "ENST00000509531.5",
"transcript_support_level": 1
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 437,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2302,
"cdna_start": 351,
"cds_end": null,
"cds_length": 1314,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000868652.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000538711.1",
"strand": true,
"transcript": "ENST00000868652.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 434,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1340,
"cdna_start": 358,
"cds_end": null,
"cds_length": 1305,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 10,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000505177.6",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000422215.2",
"strand": true,
"transcript": "ENST00000505177.6",
"transcript_support_level": 5
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 404,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2221,
"cdna_start": 369,
"cds_end": null,
"cds_length": 1215,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000868651.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000538710.1",
"strand": true,
"transcript": "ENST00000868651.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 403,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2174,
"cdna_start": 351,
"cds_end": null,
"cds_length": 1212,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000926212.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000596271.1",
"strand": true,
"transcript": "ENST00000926212.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 403,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2200,
"cdna_start": 352,
"cds_end": null,
"cds_length": 1212,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000967007.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000637066.1",
"strand": true,
"transcript": "ENST00000967007.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 395,
"aa_ref": "S",
"aa_start": 110,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2360,
"cdna_start": 532,
"cds_end": null,
"cds_length": 1188,
"cds_start": 328,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001297432.2",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.328_330delAGCinsTCT",
"hgvs_p": "p.111",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001284361.1",
"strand": true,
"transcript": "NM_001297432.2",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 395,
"aa_ref": "S",
"aa_start": 110,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1607,
"cdna_start": 532,
"cds_end": null,
"cds_length": 1188,
"cds_start": 328,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000510794.5",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.328_330delAGCinsTCT",
"hgvs_p": "p.111",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000426807.1",
"strand": true,
"transcript": "ENST00000510794.5",
"transcript_support_level": 2
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 394,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2157,
"cdna_start": 358,
"cds_end": null,
"cds_length": 1185,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000967008.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000637067.1",
"strand": true,
"transcript": "ENST00000967008.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 390,
"aa_ref": "S",
"aa_start": 105,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2136,
"cdna_start": 336,
"cds_end": null,
"cds_length": 1173,
"cds_start": 313,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000868655.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.313_315delAGCinsTCT",
"hgvs_p": "p.106",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000538714.1",
"strand": true,
"transcript": "ENST00000868655.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 383,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2112,
"cdna_start": 351,
"cds_end": null,
"cds_length": 1152,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000868656.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000538715.1",
"strand": true,
"transcript": "ENST00000868656.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 367,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2075,
"cdna_start": 351,
"cds_end": null,
"cds_length": 1104,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000868654.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000538713.1",
"strand": true,
"transcript": "ENST00000868654.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 355,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2059,
"cdna_start": 354,
"cds_end": null,
"cds_length": 1068,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_005882.5",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_005873.2",
"strand": true,
"transcript": "NM_005882.5",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 355,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2058,
"cdna_start": 354,
"cds_end": null,
"cds_length": 1068,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 8,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000264750.10",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000264750.6",
"strand": true,
"transcript": "ENST00000264750.10",
"transcript_support_level": 2
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 348,
"aa_ref": "S",
"aa_start": 63,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2300,
"cdna_start": 472,
"cds_end": null,
"cds_length": 1047,
"cds_start": 187,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "NM_001297433.2",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.187_189delAGCinsTCT",
"hgvs_p": "p.64",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001284362.1",
"strand": true,
"transcript": "NM_001297433.2",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 348,
"aa_ref": "S",
"aa_start": 63,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1444,
"cdna_start": 472,
"cds_end": null,
"cds_length": 1047,
"cds_start": 187,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000505839.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.187_189delAGCinsTCT",
"hgvs_p": "p.64",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000424436.1",
"strand": true,
"transcript": "ENST00000505839.1",
"transcript_support_level": 2
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 340,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2002,
"cdna_start": 343,
"cds_end": null,
"cds_length": 1023,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 9,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000926210.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000596269.1",
"strand": true,
"transcript": "ENST00000926210.1",
"transcript_support_level": null
},
{
"aa_alt": "S",
"aa_end": null,
"aa_length": 334,
"aa_ref": "S",
"aa_start": 111,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2005,
"cdna_start": 363,
"cds_end": null,
"cds_length": 1005,
"cds_start": 331,
"consequences": [
"synonymous_variant"
],
"exon_count": 7,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000926209.1",
"gene_hgnc_id": 13731,
"gene_symbol": "MAEA",
"hgvs_c": "c.331_333delAGCinsTCT",
"hgvs_p": "p.112",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000596268.1",
"strand": true,
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