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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 4-152870765-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=152870765&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "4",
      "pos": 152870765,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_001025595.3",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "NM_001025595.3",
          "protein_id": "NP_001020766.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000353617.7",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001025595.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000353617.7",
          "protein_id": "ENSP00000296557.4",
          "transcript_support_level": 5,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001025595.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000353617.7"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000451320.6",
          "protein_id": "ENSP00000395083.2",
          "transcript_support_level": 1,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000451320.6"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.203-1687C>T",
          "hgvs_p": null,
          "transcript": "ENST00000356064.3",
          "protein_id": "ENSP00000348360.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 341,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1026,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000356064.3"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.203-1687C>T",
          "hgvs_p": null,
          "transcript": "ENST00000405727.6",
          "protein_id": "ENSP00000384189.2",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 341,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1026,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000405727.6"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891691.1",
          "protein_id": "ENSP00000561750.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 390,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1173,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891691.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "NM_001287431.2",
          "protein_id": "NP_001274360.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001287431.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "NM_001287432.2",
          "protein_id": "NP_001274361.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001287432.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891683.1",
          "protein_id": "ENSP00000561742.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891683.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891684.1",
          "protein_id": "ENSP00000561743.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891684.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891688.1",
          "protein_id": "ENSP00000561747.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
          "cds_end": null,
          "cds_length": 1122,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891688.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891689.1",
          "protein_id": "ENSP00000561748.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
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          "cds_length": 1122,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891689.1"
        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891692.1",
          "protein_id": "ENSP00000561751.1",
          "transcript_support_level": null,
          "aa_start": 72,
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          "aa_length": 373,
          "cds_start": 215,
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          "cds_length": 1122,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891692.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891693.1",
          "protein_id": "ENSP00000561752.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
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          "cds_start": 215,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        {
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891694.1",
          "protein_id": "ENSP00000561753.1",
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          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000891694.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891696.1",
          "protein_id": "ENSP00000561755.1",
          "transcript_support_level": null,
          "aa_start": 72,
          "aa_end": null,
          "aa_length": 373,
          "cds_start": 215,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891699.1",
          "protein_id": "ENSP00000561758.1",
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          "aa_start": 72,
          "aa_end": null,
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          "cds_start": 215,
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          "biotype": "protein_coding",
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        },
        {
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          ],
          "exon_rank": 6,
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          "exon_count": 11,
          "intron_rank": null,
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          "gene_symbol": "ARFIP1",
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          "hgvs_c": "c.215C>T",
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          "transcript": "ENST00000891700.1",
          "protein_id": "ENSP00000561759.1",
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          "cds_start": 215,
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          "biotype": "protein_coding",
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        },
        {
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          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "ARFIP1",
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          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891701.1",
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000891701.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ARFIP1",
          "gene_hgnc_id": 21496,
          "hgvs_c": "c.215C>T",
          "hgvs_p": "p.Pro72Leu",
          "transcript": "ENST00000891702.1",
          "protein_id": "ENSP00000561761.1",
          "transcript_support_level": null,
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          "cds_start": 215,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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      "acmg_score": -2,
      "acmg_classification": "Likely_benign",
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          "verdict": "Likely_benign",
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      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
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  ],
  "message": null
}