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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-155355874-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=155355874&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 155355874,
"ref": "A",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_001039580.2",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1132T>A",
"hgvs_p": "p.Ser378Thr",
"transcript": "NM_001039580.2",
"protein_id": "NP_001034669.1",
"transcript_support_level": null,
"aa_start": 378,
"aa_end": null,
"aa_length": 647,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000311277.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001039580.2"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1132T>A",
"hgvs_p": "p.Ser378Thr",
"transcript": "ENST00000311277.9",
"protein_id": "ENSP00000310593.4",
"transcript_support_level": 1,
"aa_start": 378,
"aa_end": null,
"aa_length": 647,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001039580.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000311277.9"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1129T>A",
"hgvs_p": "p.Ser377Thr",
"transcript": "ENST00000433024.5",
"protein_id": "ENSP00000394048.1",
"transcript_support_level": 1,
"aa_start": 377,
"aa_end": null,
"aa_length": 487,
"cds_start": 1129,
"cds_end": null,
"cds_length": 1465,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000433024.5"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1132T>A",
"hgvs_p": "p.Ser378Thr",
"transcript": "ENST00000650955.1",
"protein_id": "ENSP00000498412.1",
"transcript_support_level": null,
"aa_start": 378,
"aa_end": null,
"aa_length": 647,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000650955.1"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1132T>A",
"hgvs_p": "p.Ser378Thr",
"transcript": "ENST00000933329.1",
"protein_id": "ENSP00000603388.1",
"transcript_support_level": null,
"aa_start": 378,
"aa_end": null,
"aa_length": 647,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933329.1"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1132T>A",
"hgvs_p": "p.Ser378Thr",
"transcript": "ENST00000933332.1",
"protein_id": "ENSP00000603390.1",
"transcript_support_level": null,
"aa_start": 378,
"aa_end": null,
"aa_length": 647,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933332.1"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1129T>A",
"hgvs_p": "p.Ser377Thr",
"transcript": "ENST00000933327.1",
"protein_id": "ENSP00000603386.1",
"transcript_support_level": null,
"aa_start": 377,
"aa_end": null,
"aa_length": 646,
"cds_start": 1129,
"cds_end": null,
"cds_length": 1941,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933327.1"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1129T>A",
"hgvs_p": "p.Ser377Thr",
"transcript": "ENST00000933330.1",
"protein_id": "ENSP00000603389.1",
"transcript_support_level": null,
"aa_start": 377,
"aa_end": null,
"aa_length": 646,
"cds_start": 1129,
"cds_end": null,
"cds_length": 1941,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933330.1"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1060T>A",
"hgvs_p": "p.Ser354Thr",
"transcript": "ENST00000515654.5",
"protein_id": "ENSP00000427402.1",
"transcript_support_level": 5,
"aa_start": 354,
"aa_end": null,
"aa_length": 623,
"cds_start": 1060,
"cds_end": null,
"cds_length": 1872,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000515654.5"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1132T>A",
"hgvs_p": "p.Ser378Thr",
"transcript": "XM_011532253.2",
"protein_id": "XP_011530555.1",
"transcript_support_level": null,
"aa_start": 378,
"aa_end": null,
"aa_length": 647,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011532253.2"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1132T>A",
"hgvs_p": "p.Ser378Thr",
"transcript": "XM_011532254.2",
"protein_id": "XP_011530556.1",
"transcript_support_level": null,
"aa_start": 378,
"aa_end": null,
"aa_length": 647,
"cds_start": 1132,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011532254.2"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1129T>A",
"hgvs_p": "p.Ser377Thr",
"transcript": "XM_017008616.2",
"protein_id": "XP_016864105.1",
"transcript_support_level": null,
"aa_start": 377,
"aa_end": null,
"aa_length": 646,
"cds_start": 1129,
"cds_end": null,
"cds_length": 1941,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017008616.2"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1129T>A",
"hgvs_p": "p.Ser377Thr",
"transcript": "XM_017008617.2",
"protein_id": "XP_016864106.1",
"transcript_support_level": null,
"aa_start": 377,
"aa_end": null,
"aa_length": 646,
"cds_start": 1129,
"cds_end": null,
"cds_length": 1941,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017008617.2"
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.916T>A",
"hgvs_p": "p.Ser306Thr",
"transcript": "XM_011532255.4",
"protein_id": "XP_011530557.1",
"transcript_support_level": null,
"aa_start": 306,
"aa_end": null,
"aa_length": 575,
"cds_start": 916,
"cds_end": null,
"cds_length": 1728,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011532255.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "c.1051-2534T>A",
"hgvs_p": null,
"transcript": "ENST00000933328.1",
"protein_id": "ENSP00000603387.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 537,
"cds_start": null,
"cds_end": null,
"cds_length": 1614,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933328.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MAP9-AS1",
"gene_hgnc_id": 56110,
"hgvs_c": "n.302-1215A>T",
"hgvs_p": null,
"transcript": "ENST00000417474.2",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000417474.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "MAP9",
"gene_hgnc_id": 26118,
"hgvs_c": "n.1122-714T>A",
"hgvs_p": null,
"transcript": "ENST00000424373.5",
"protein_id": "ENSP00000413553.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000424373.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "MAP9-AS1",
"gene_hgnc_id": 56110,
"hgvs_c": "n.725-1215A>T",
"hgvs_p": null,
"transcript": "ENST00000593387.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000593387.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "MAP9-AS1",
"gene_hgnc_id": 56110,
"hgvs_c": "n.162-1215A>T",
"hgvs_p": null,
"transcript": "ENST00000597831.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000597831.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "MAP9-AS1",
"gene_hgnc_id": 56110,
"hgvs_c": "n.615-1215A>T",
"hgvs_p": null,
"transcript": "ENST00000598252.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000598252.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "MAP9-AS1",
"gene_hgnc_id": 56110,
"hgvs_c": "n.327-1215A>T",
"hgvs_p": null,
"transcript": "ENST00000598890.6",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000598890.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "MAP9-AS1",
"gene_hgnc_id": 56110,
"hgvs_c": "n.534-1215A>T",
"hgvs_p": null,
"transcript": "ENST00000601977.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000601977.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
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"splice_prediction_selected": "Benign",
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"revel_prediction": "Benign",
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"bayesdelnoaf_score": -0.48,
"bayesdelnoaf_prediction": "Benign",
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"phylop100way_prediction": "Benign",
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"spliceai_max_prediction": "Benign",
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{
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"BP4_Moderate"
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"verdict": "Uncertain_significance",
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{
"score": 0,
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],
"verdict": "Uncertain_significance",
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],
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],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}