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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-157281250-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=157281250&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 157281250,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000264426.14",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.230-22302G>C",
"hgvs_p": null,
"transcript": "NM_001083619.3",
"protein_id": "NP_001077088.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 883,
"cds_start": -4,
"cds_end": null,
"cds_length": 2652,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5611,
"mane_select": "ENST00000264426.14",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.230-22302G>C",
"hgvs_p": null,
"transcript": "ENST00000264426.14",
"protein_id": "ENSP00000264426.9",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 883,
"cds_start": -4,
"cds_end": null,
"cds_length": 2652,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5611,
"mane_select": "NM_001083619.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.230-22302G>C",
"hgvs_p": null,
"transcript": "ENST00000296526.12",
"protein_id": "ENSP00000296526.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 883,
"cds_start": -4,
"cds_end": null,
"cds_length": 2652,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5611,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.89-22302G>C",
"hgvs_p": null,
"transcript": "ENST00000393815.6",
"protein_id": "ENSP00000377403.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 836,
"cds_start": -4,
"cds_end": null,
"cds_length": 2511,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5260,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.230-22302G>C",
"hgvs_p": null,
"transcript": "ENST00000645636.1",
"protein_id": "ENSP00000495569.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 901,
"cds_start": -4,
"cds_end": null,
"cds_length": 2706,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3398,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.230-22302G>C",
"hgvs_p": null,
"transcript": "ENST00000703760.1",
"protein_id": "ENSP00000515468.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 892,
"cds_start": -4,
"cds_end": null,
"cds_length": 2679,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4179,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.230-22302G>C",
"hgvs_p": null,
"transcript": "NM_000826.6",
"protein_id": "NP_000817.5",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 883,
"cds_start": -4,
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"cds_length": 2652,
"cdna_start": null,
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"cdna_length": 5611,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.89-22302G>C",
"hgvs_p": null,
"transcript": "ENST00000703752.1",
"protein_id": "ENSP00000515461.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 854,
"cds_start": -4,
"cds_end": null,
"cds_length": 2565,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3006,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.89-22302G>C",
"hgvs_p": null,
"transcript": "NM_001083620.3",
"protein_id": "NP_001077089.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 836,
"cds_start": -4,
"cds_end": null,
"cds_length": 2511,
"cdna_start": null,
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"cdna_length": 5315,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.89-22302G>C",
"hgvs_p": null,
"transcript": "NM_001379000.3",
"protein_id": "NP_001365929.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 2,
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"gene_symbol": "GRIA2",
"gene_hgnc_id": 4572,
"hgvs_c": "c.89-22302G>C",
"hgvs_p": null,
"transcript": "NM_001379001.3",
"protein_id": "NP_001365930.3",
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},
{
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"strand": true,
"consequences": [
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],
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"gene_symbol": "GRIA2",
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"hgvs_c": "c.89-22302G>C",
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"transcript": "ENST00000507898.5",
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},
{
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],
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"gene_symbol": "GRIA2",
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"hgvs_c": "c.89-22302G>C",
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"transcript": "ENST00000703717.1",
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},
{
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],
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"gene_symbol": "GRIA2",
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"hgvs_c": "c.89-22302G>C",
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"transcript": "ENST00000703765.1",
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],
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},
{
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],
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"gene_symbol": "GRIA2",
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"transcript": "ENST00000703767.1",
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],
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},
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],
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"gene_symbol": "GRIA2",
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"hgvs_c": "c.89-22302G>C",
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},
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],
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"gene_symbol": "GRIA2",
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},
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],
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},
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],
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"gene_symbol": "GRIA2",
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"hgvs_c": "c.230-22302G>C",
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"transcript": "ENST00000509417.5",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 2,
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"gene_symbol": "GRIA2",
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"hgvs_c": "c.89-22302G>C",
"hgvs_p": null,
"transcript": "ENST00000506284.5",
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