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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-158861409-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=158861409&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 158861409,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001366843.1",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1216G>A",
"hgvs_p": "p.Gly406Ser",
"transcript": "NM_020840.3",
"protein_id": "NP_065891.1",
"transcript_support_level": null,
"aa_start": 406,
"aa_end": null,
"aa_length": 1114,
"cds_start": 1216,
"cds_end": null,
"cds_length": 3345,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000264433.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_020840.3"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1216G>A",
"hgvs_p": "p.Gly406Ser",
"transcript": "ENST00000264433.11",
"protein_id": "ENSP00000264433.6",
"transcript_support_level": 1,
"aa_start": 406,
"aa_end": null,
"aa_length": 1114,
"cds_start": 1216,
"cds_end": null,
"cds_length": 3345,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_020840.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000264433.11"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1285G>A",
"hgvs_p": "p.Gly429Ser",
"transcript": "ENST00000512986.5",
"protein_id": "ENSP00000421488.1",
"transcript_support_level": 1,
"aa_start": 429,
"aa_end": null,
"aa_length": 672,
"cds_start": 1285,
"cds_end": null,
"cds_length": 2019,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000512986.5"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1375G>A",
"hgvs_p": "p.Gly459Ser",
"transcript": "NM_001366843.1",
"protein_id": "NP_001353772.1",
"transcript_support_level": null,
"aa_start": 459,
"aa_end": null,
"aa_length": 1167,
"cds_start": 1375,
"cds_end": null,
"cds_length": 3504,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366843.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1297G>A",
"hgvs_p": "p.Gly433Ser",
"transcript": "ENST00000956831.1",
"protein_id": "ENSP00000626890.1",
"transcript_support_level": null,
"aa_start": 433,
"aa_end": null,
"aa_length": 1141,
"cds_start": 1297,
"cds_end": null,
"cds_length": 3426,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956831.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1285G>A",
"hgvs_p": "p.Gly429Ser",
"transcript": "NM_001323916.2",
"protein_id": "NP_001310845.1",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 1137,
"cds_start": 1285,
"cds_end": null,
"cds_length": 3414,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001323916.2"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1087G>A",
"hgvs_p": "p.Gly363Ser",
"transcript": "ENST00000956830.1",
"protein_id": "ENSP00000626889.1",
"transcript_support_level": null,
"aa_start": 363,
"aa_end": null,
"aa_length": 1071,
"cds_start": 1087,
"cds_end": null,
"cds_length": 3216,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956830.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.154G>A",
"hgvs_p": "p.Gly52Ser",
"transcript": "NM_001346043.2",
"protein_id": "NP_001332972.1",
"transcript_support_level": null,
"aa_start": 52,
"aa_end": null,
"aa_length": 760,
"cds_start": 154,
"cds_end": null,
"cds_length": 2283,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001346043.2"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 13,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1324G>A",
"hgvs_p": "p.Gly442Ser",
"transcript": "XM_017008487.2",
"protein_id": "XP_016863976.1",
"transcript_support_level": null,
"aa_start": 442,
"aa_end": null,
"aa_length": 1150,
"cds_start": 1324,
"cds_end": null,
"cds_length": 3453,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017008487.2"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1306G>A",
"hgvs_p": "p.Gly436Ser",
"transcript": "XM_005263158.3",
"protein_id": "XP_005263215.1",
"transcript_support_level": null,
"aa_start": 436,
"aa_end": null,
"aa_length": 1144,
"cds_start": 1306,
"cds_end": null,
"cds_length": 3435,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005263158.3"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1375G>A",
"hgvs_p": "p.Gly459Ser",
"transcript": "XM_005263160.4",
"protein_id": "XP_005263217.1",
"transcript_support_level": null,
"aa_start": 459,
"aa_end": null,
"aa_length": 1061,
"cds_start": 1375,
"cds_end": null,
"cds_length": 3186,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_005263160.4"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1375G>A",
"hgvs_p": "p.Gly459Ser",
"transcript": "XM_047416017.1",
"protein_id": "XP_047271973.1",
"transcript_support_level": null,
"aa_start": 459,
"aa_end": null,
"aa_length": 1047,
"cds_start": 1375,
"cds_end": null,
"cds_length": 3144,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047416017.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1306G>A",
"hgvs_p": "p.Gly436Ser",
"transcript": "XM_047416018.1",
"protein_id": "XP_047271974.1",
"transcript_support_level": null,
"aa_start": 436,
"aa_end": null,
"aa_length": 1038,
"cds_start": 1306,
"cds_end": null,
"cds_length": 3117,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047416018.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1375G>A",
"hgvs_p": "p.Gly459Ser",
"transcript": "XM_024454161.2",
"protein_id": "XP_024309929.1",
"transcript_support_level": null,
"aa_start": 459,
"aa_end": null,
"aa_length": 1036,
"cds_start": 1375,
"cds_end": null,
"cds_length": 3111,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_024454161.2"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1285G>A",
"hgvs_p": "p.Gly429Ser",
"transcript": "XM_047416019.1",
"protein_id": "XP_047271975.1",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 1031,
"cds_start": 1285,
"cds_end": null,
"cds_length": 3096,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047416019.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.1285G>A",
"hgvs_p": "p.Gly429Ser",
"transcript": "XM_047416021.1",
"protein_id": "XP_047271977.1",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 1006,
"cds_start": 1285,
"cds_end": null,
"cds_length": 3021,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047416021.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"hgvs_c": "c.304G>A",
"hgvs_p": "p.Gly102Ser",
"transcript": "XM_047416022.1",
"protein_id": "XP_047271978.1",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 810,
"cds_start": 304,
"cds_end": null,
"cds_length": 2433,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047416022.1"
}
],
"gene_symbol": "FNIP2",
"gene_hgnc_id": 29280,
"dbsnp": "rs1273551648",
"frequency_reference_population": 0.00002044891,
"hom_count_reference_population": 0,
"allele_count_reference_population": 33,
"gnomad_exomes_af": 0.000019156,
"gnomad_genomes_af": 0.0000328744,
"gnomad_exomes_ac": 28,
"gnomad_genomes_ac": 5,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.043851375579833984,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.026,
"revel_prediction": "Benign",
"alphamissense_score": 0.0506,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.71,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.558,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP6_Moderate",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 6,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP6_Moderate"
],
"verdict": "Likely_benign",
"transcript": "NM_001366843.1",
"gene_symbol": "FNIP2",
"hgnc_id": 29280,
"effects": [
"missense_variant"
],
"inheritance_mode": "",
"hgvs_c": "c.1375G>A",
"hgvs_p": "p.Gly459Ser"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}