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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-1806919-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=1806919&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 16,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BS1"
],
"effects": [
"missense_variant"
],
"gene_symbol": "FGFR3",
"hgnc_id": 3690,
"hgvs_c": "c.2191C>T",
"hgvs_p": "p.Arg731Cys",
"inheritance_mode": "AR,AD,SD",
"pathogenic_score": 0,
"score": -16,
"transcript": "NM_001354810.2",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BS1",
"acmg_score": -16,
"allele_count_reference_population": 179,
"alphamissense_prediction": "Benign",
"alphamissense_score": 0.2359,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.07,
"chr": "4",
"clinvar_classification": "Benign/Likely benign",
"clinvar_disease": "not provided",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:1 B:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.029880911111831665,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 792,
"aa_ref": "R",
"aa_start": 731,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4149,
"cdna_start": 2458,
"cds_end": null,
"cds_length": 2379,
"cds_start": 2191,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000481110.7",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2191C>T",
"hgvs_p": "p.Arg731Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000420533.2",
"strand": true,
"transcript": "ENST00000481110.7",
"transcript_support_level": 1
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 806,
"aa_ref": "T",
"aa_start": 753,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4301,
"cdna_start": 2534,
"cds_end": null,
"cds_length": 2421,
"cds_start": 2259,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "NM_000142.5",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2259C>T",
"hgvs_p": "p.Thr753Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000440486.8",
"protein_coding": true,
"protein_id": "NP_000133.1",
"strand": true,
"transcript": "NM_000142.5",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 806,
"aa_ref": "T",
"aa_start": 753,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4301,
"cdna_start": 2534,
"cds_end": null,
"cds_length": 2421,
"cds_start": 2259,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000440486.8",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2259C>T",
"hgvs_p": "p.Thr753Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_000142.5",
"protein_coding": true,
"protein_id": "ENSP00000414914.2",
"strand": true,
"transcript": "ENST00000440486.8",
"transcript_support_level": 5
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 694,
"aa_ref": "T",
"aa_start": 641,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2184,
"cdna_start": 1962,
"cds_end": null,
"cds_length": 2085,
"cds_start": 1923,
"consequences": [
"synonymous_variant"
],
"exon_count": 15,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000352904.6",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.1923C>T",
"hgvs_p": "p.Thr641Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000231803.1",
"strand": true,
"transcript": "ENST00000352904.6",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 2841,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 19,
"exon_rank": 18,
"exon_rank_end": null,
"feature": "ENST00000260795.8",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "n.*1315C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000260795.3",
"strand": true,
"transcript": "ENST00000260795.8",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 2841,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"3_prime_UTR_variant"
],
"exon_count": 19,
"exon_rank": 18,
"exon_rank_end": null,
"feature": "ENST00000260795.8",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "n.*1315C>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000260795.3",
"strand": true,
"transcript": "ENST00000260795.8",
"transcript_support_level": 1
},
{
"aa_alt": "C",
"aa_end": null,
"aa_length": 792,
"aa_ref": "R",
"aa_start": 731,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4233,
"cdna_start": 2466,
"cds_end": null,
"cds_length": 2379,
"cds_start": 2191,
"consequences": [
"missense_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "NM_001354810.2",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2191C>T",
"hgvs_p": "p.Arg731Cys",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001341739.1",
"strand": true,
"transcript": "NM_001354810.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 809,
"aa_ref": "T",
"aa_start": 756,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4316,
"cdna_start": 2543,
"cds_end": null,
"cds_length": 2430,
"cds_start": 2268,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000901225.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2268C>T",
"hgvs_p": "p.Thr756Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000571284.1",
"strand": true,
"transcript": "ENST00000901225.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 808,
"aa_ref": "T",
"aa_start": 755,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4307,
"cdna_start": 2540,
"cds_end": null,
"cds_length": 2427,
"cds_start": 2265,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "NM_001163213.2",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2265C>T",
"hgvs_p": "p.Thr755Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001156685.1",
"strand": true,
"transcript": "NM_001163213.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 808,
"aa_ref": "T",
"aa_start": 755,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4307,
"cdna_start": 2540,
"cds_end": null,
"cds_length": 2427,
"cds_start": 2265,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000340107.9",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2265C>T",
"hgvs_p": "p.Thr755Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000339824.4",
"strand": true,
"transcript": "ENST00000340107.9",
"transcript_support_level": 5
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 808,
"aa_ref": "T",
"aa_start": 755,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4230,
"cdna_start": 2461,
"cds_end": null,
"cds_length": 2427,
"cds_start": 2265,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000901227.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2265C>T",
"hgvs_p": "p.Thr755Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000571286.1",
"strand": true,
"transcript": "ENST00000901227.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 808,
"aa_ref": "T",
"aa_start": 754,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4294,
"cdna_start": 2527,
"cds_end": null,
"cds_length": 2427,
"cds_start": 2262,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000955403.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2262C>T",
"hgvs_p": "p.Thr754Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000625462.1",
"strand": true,
"transcript": "ENST00000955403.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 807,
"aa_ref": "T",
"aa_start": 754,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4304,
"cdna_start": 2537,
"cds_end": null,
"cds_length": 2424,
"cds_start": 2262,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "NM_001354809.2",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2262C>T",
"hgvs_p": "p.Thr754Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001341738.1",
"strand": true,
"transcript": "NM_001354809.2",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 807,
"aa_ref": "T",
"aa_start": 754,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4315,
"cdna_start": 2544,
"cds_end": null,
"cds_length": 2424,
"cds_start": 2262,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000911470.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2262C>T",
"hgvs_p": "p.Thr754Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000581529.1",
"strand": true,
"transcript": "ENST00000911470.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 807,
"aa_ref": "T",
"aa_start": 753,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4302,
"cdna_start": 2532,
"cds_end": null,
"cds_length": 2424,
"cds_start": 2259,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000911473.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2259C>T",
"hgvs_p": "p.Thr753Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000581532.1",
"strand": true,
"transcript": "ENST00000911473.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 807,
"aa_ref": "T",
"aa_start": 754,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4233,
"cdna_start": 2466,
"cds_end": null,
"cds_length": 2424,
"cds_start": 2262,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000955404.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2262C>T",
"hgvs_p": "p.Thr754Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000625463.1",
"strand": true,
"transcript": "ENST00000955404.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 806,
"aa_ref": "T",
"aa_start": 753,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4233,
"cdna_start": 2460,
"cds_end": null,
"cds_length": 2421,
"cds_start": 2259,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000901226.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2259C>T",
"hgvs_p": "p.Thr753Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000571285.1",
"strand": true,
"transcript": "ENST00000901226.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 802,
"aa_ref": "T",
"aa_start": 749,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4294,
"cdna_start": 2522,
"cds_end": null,
"cds_length": 2409,
"cds_start": 2247,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000412135.7",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2247C>T",
"hgvs_p": "p.Thr749Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000412903.3",
"strand": true,
"transcript": "ENST00000412135.7",
"transcript_support_level": 5
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 794,
"aa_ref": "T",
"aa_start": 741,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4266,
"cdna_start": 2496,
"cds_end": null,
"cds_length": 2385,
"cds_start": 2223,
"consequences": [
"synonymous_variant"
],
"exon_count": 18,
"exon_rank": 17,
"exon_rank_end": null,
"feature": "ENST00000911472.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2223C>T",
"hgvs_p": "p.Thr741Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000581531.1",
"strand": true,
"transcript": "ENST00000911472.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 794,
"aa_ref": "T",
"aa_start": 741,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4056,
"cdna_start": 2285,
"cds_end": null,
"cds_length": 2385,
"cds_start": 2223,
"consequences": [
"synonymous_variant"
],
"exon_count": 17,
"exon_rank": 16,
"exon_rank_end": null,
"feature": "ENST00000911474.1",
"gene_hgnc_id": 3690,
"gene_symbol": "FGFR3",
"hgvs_c": "c.2223C>T",
"hgvs_p": "p.Thr741Thr",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000581533.1",
"strand": true,
"transcript": "ENST00000911474.1",
"transcript_support_level": null
},
{
"aa_alt": "T",
"aa_end": null,
"aa_length": 793,
"aa_ref": "T",
"aa_start": 740,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4259,
"cdna_start": 2494,
"cds_end": null,
"cds_length": 2382,
"cds_start": 2220,
"consequences": [
"synonymous_variant"
],
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