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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 4-47603488-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=47603488&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "4",
      "pos": 47603488,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "NM_006587.4",
      "consequences": [
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2721C>T",
          "hgvs_p": "p.Tyr907Tyr",
          "transcript": "NM_006587.4",
          "protein_id": "NP_006578.2",
          "transcript_support_level": null,
          "aa_start": 907,
          "aa_end": null,
          "aa_length": 1042,
          "cds_start": 2721,
          "cds_end": null,
          "cds_length": 3129,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000273857.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_006587.4"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2721C>T",
          "hgvs_p": "p.Tyr907Tyr",
          "transcript": "ENST00000273857.9",
          "protein_id": "ENSP00000273857.4",
          "transcript_support_level": 1,
          "aa_start": 907,
          "aa_end": null,
          "aa_length": 1042,
          "cds_start": 2721,
          "cds_end": null,
          "cds_length": 3129,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_006587.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000273857.9"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2796C>T",
          "hgvs_p": "p.Tyr932Tyr",
          "transcript": "ENST00000961995.1",
          "protein_id": "ENSP00000632054.1",
          "transcript_support_level": null,
          "aa_start": 932,
          "aa_end": null,
          "aa_length": 1067,
          "cds_start": 2796,
          "cds_end": null,
          "cds_length": 3204,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961995.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2703C>T",
          "hgvs_p": "p.Tyr901Tyr",
          "transcript": "ENST00000961980.1",
          "protein_id": "ENSP00000632039.1",
          "transcript_support_level": null,
          "aa_start": 901,
          "aa_end": null,
          "aa_length": 1036,
          "cds_start": 2703,
          "cds_end": null,
          "cds_length": 3111,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961980.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2640C>T",
          "hgvs_p": "p.Tyr880Tyr",
          "transcript": "ENST00000961985.1",
          "protein_id": "ENSP00000632044.1",
          "transcript_support_level": null,
          "aa_start": 880,
          "aa_end": null,
          "aa_length": 1015,
          "cds_start": 2640,
          "cds_end": null,
          "cds_length": 3048,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961985.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2628C>T",
          "hgvs_p": "p.Tyr876Tyr",
          "transcript": "ENST00000961989.1",
          "protein_id": "ENSP00000632048.1",
          "transcript_support_level": null,
          "aa_start": 876,
          "aa_end": null,
          "aa_length": 1011,
          "cds_start": 2628,
          "cds_end": null,
          "cds_length": 3036,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961989.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2613C>T",
          "hgvs_p": "p.Tyr871Tyr",
          "transcript": "ENST00000891633.1",
          "protein_id": "ENSP00000561692.1",
          "transcript_support_level": null,
          "aa_start": 871,
          "aa_end": null,
          "aa_length": 1006,
          "cds_start": 2613,
          "cds_end": null,
          "cds_length": 3021,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891633.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2613C>T",
          "hgvs_p": "p.Tyr871Tyr",
          "transcript": "ENST00000891636.1",
          "protein_id": "ENSP00000561695.1",
          "transcript_support_level": null,
          "aa_start": 871,
          "aa_end": null,
          "aa_length": 1006,
          "cds_start": 2613,
          "cds_end": null,
          "cds_length": 3021,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891636.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2610C>T",
          "hgvs_p": "p.Tyr870Tyr",
          "transcript": "ENST00000505909.5",
          "protein_id": "ENSP00000425401.1",
          "transcript_support_level": 5,
          "aa_start": 870,
          "aa_end": null,
          "aa_length": 1005,
          "cds_start": 2610,
          "cds_end": null,
          "cds_length": 3018,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000505909.5"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2607C>T",
          "hgvs_p": "p.Tyr869Tyr",
          "transcript": "ENST00000891632.1",
          "protein_id": "ENSP00000561691.1",
          "transcript_support_level": null,
          "aa_start": 869,
          "aa_end": null,
          "aa_length": 1004,
          "cds_start": 2607,
          "cds_end": null,
          "cds_length": 3015,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891632.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2604C>T",
          "hgvs_p": "p.Tyr868Tyr",
          "transcript": "ENST00000961993.1",
          "protein_id": "ENSP00000632052.1",
          "transcript_support_level": null,
          "aa_start": 868,
          "aa_end": null,
          "aa_length": 1003,
          "cds_start": 2604,
          "cds_end": null,
          "cds_length": 3012,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961993.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2532C>T",
          "hgvs_p": "p.Tyr844Tyr",
          "transcript": "ENST00000961994.1",
          "protein_id": "ENSP00000632053.1",
          "transcript_support_level": null,
          "aa_start": 844,
          "aa_end": null,
          "aa_length": 979,
          "cds_start": 2532,
          "cds_end": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2520C>T",
          "hgvs_p": "p.Tyr840Tyr",
          "transcript": "ENST00000502252.5",
          "protein_id": "ENSP00000424212.1",
          "transcript_support_level": 2,
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          "cds_start": 2520,
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          "cdna_start": null,
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          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000502252.5"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2505C>T",
          "hgvs_p": "p.Tyr835Tyr",
          "transcript": "ENST00000961982.1",
          "protein_id": "ENSP00000632041.1",
          "transcript_support_level": null,
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          "aa_end": null,
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          "cds_start": 2505,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          "intron_rank": null,
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          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2502C>T",
          "hgvs_p": "p.Tyr834Tyr",
          "transcript": "ENST00000891635.1",
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000891635.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2502C>T",
          "hgvs_p": "p.Tyr834Tyr",
          "transcript": "ENST00000961984.1",
          "protein_id": "ENSP00000632043.1",
          "transcript_support_level": null,
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          "aa_end": null,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2502C>T",
          "hgvs_p": "p.Tyr834Tyr",
          "transcript": "ENST00000961988.1",
          "protein_id": "ENSP00000632047.1",
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
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          "strand": false,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2496C>T",
          "hgvs_p": "p.Tyr832Tyr",
          "transcript": "ENST00000961991.1",
          "protein_id": "ENSP00000632050.1",
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          "cds_start": 2496,
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          "cdna_start": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2412C>T",
          "hgvs_p": "p.Tyr804Tyr",
          "transcript": "ENST00000891634.1",
          "protein_id": "ENSP00000561693.1",
          "transcript_support_level": null,
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          "aa_end": null,
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          "cds_start": 2412,
          "cds_end": null,
          "cds_length": 2820,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000891634.1"
        },
        {
          "aa_ref": "Y",
          "aa_alt": "Y",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CORIN",
          "gene_hgnc_id": 19012,
          "hgvs_c": "c.2409C>T",
          "hgvs_p": "p.Tyr803Tyr",
          "transcript": "NM_001278585.2",
          "protein_id": "NP_001265514.1",
          "transcript_support_level": null,
          "aa_start": 803,
          "aa_end": null,
          "aa_length": 938,
          "cds_start": 2409,
          "cds_end": null,
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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}