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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-56650683-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=56650683&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 56650683,
"ref": "C",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000420433.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.199-1886G>A",
"hgvs_p": null,
"transcript": "NM_032495.6",
"protein_id": "NP_115884.4",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 91,
"cds_start": -4,
"cds_end": null,
"cds_length": 276,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1123,
"mane_select": "ENST00000420433.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.199-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000420433.6",
"protein_id": "ENSP00000396275.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 91,
"cds_start": -4,
"cds_end": null,
"cds_length": 276,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1123,
"mane_select": "NM_032495.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000317745.11",
"protein_id": "ENSP00000315198.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
"cds_end": null,
"cds_length": 222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1129,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000337881.12",
"protein_id": "ENSP00000337330.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
"cds_end": null,
"cds_length": 222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 998,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000503639.7",
"protein_id": "ENSP00000424101.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
"cds_end": null,
"cds_length": 222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1248,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000556614.6",
"protein_id": "ENSP00000452003.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
"cds_end": null,
"cds_length": 222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1138,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.328G>A",
"hgvs_p": "p.Glu110Lys",
"transcript": "NM_001145460.2",
"protein_id": "NP_001138932.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 112,
"cds_start": 328,
"cds_end": null,
"cds_length": 339,
"cdna_start": 453,
"cdna_end": null,
"cdna_length": 1253,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.328G>A",
"hgvs_p": "p.Glu110Lys",
"transcript": "ENST00000554144.5",
"protein_id": "ENSP00000450527.1",
"transcript_support_level": 5,
"aa_start": 110,
"aa_end": null,
"aa_length": 112,
"cds_start": 328,
"cds_end": null,
"cds_length": 339,
"cdna_start": 863,
"cdna_end": null,
"cdna_length": 1672,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant",
"splice_region_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.274G>A",
"hgvs_p": "p.Glu92Lys",
"transcript": "ENST00000381260.7",
"protein_id": "ENSP00000370659.2",
"transcript_support_level": 3,
"aa_start": 92,
"aa_end": null,
"aa_length": 94,
"cds_start": 274,
"cds_end": null,
"cds_length": 285,
"cdna_start": 341,
"cdna_end": null,
"cdna_length": 1141,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 1,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "n.520G>A",
"hgvs_p": null,
"transcript": "ENST00000503864.2",
"protein_id": null,
"transcript_support_level": 6,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3203,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "NM_001145459.2",
"protein_id": "NP_001138931.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
"cds_end": null,
"cds_length": 222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1174,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "NM_001438047.1",
"protein_id": "NP_001424976.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
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"cds_length": 222,
"cdna_start": null,
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"cdna_length": 1066,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "NM_139211.5",
"protein_id": "NP_631957.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "NM_139212.4",
"protein_id": "NP_631958.1",
"transcript_support_level": null,
"aa_start": null,
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"feature": null
},
{
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"canonical": false,
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000381255.7",
"protein_id": "ENSP00000370654.3",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 1164,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000508121.2",
"protein_id": "ENSP00000422175.2",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000553379.6",
"protein_id": "ENSP00000452340.1",
"transcript_support_level": 2,
"aa_start": null,
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"aa_length": 73,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000555760.6",
"protein_id": "ENSP00000452098.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 73,
"cds_start": -4,
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"cds_length": 222,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1139,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.145-1886G>A",
"hgvs_p": null,
"transcript": "ENST00000556376.6",
"protein_id": "ENSP00000451794.1",
"transcript_support_level": 3,
"aa_start": null,
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.259-1886G>A",
"hgvs_p": null,
"transcript": "XM_017008729.3",
"protein_id": "XP_016864218.2",
"transcript_support_level": null,
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"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.199-1886G>A",
"hgvs_p": null,
"transcript": "XM_047416319.1",
"protein_id": "XP_047272275.1",
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"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.199-1886G>A",
"hgvs_p": null,
"transcript": "XM_047416320.1",
"protein_id": "XP_047272276.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 91,
"cds_start": -4,
"cds_end": null,
"cds_length": 276,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1242,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "HOPX",
"gene_hgnc_id": 24961,
"hgvs_c": "c.199-1886G>A",
"hgvs_p": null,
"transcript": "XM_047416321.1",
"protein_id": "XP_047272277.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 91,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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}