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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 4-6301085-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=6301085&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "4",
      "pos": 6301085,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "NM_006005.3",
      "consequences": [
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "NM_006005.3",
          "protein_id": "NP_005996.2",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1460,
          "cdna_end": null,
          "cdna_length": 3640,
          "mane_select": "ENST00000226760.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_006005.3"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000226760.5",
          "protein_id": "ENSP00000226760.1",
          "transcript_support_level": 1,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1460,
          "cdna_end": null,
          "cdna_length": 3640,
          "mane_select": "NM_006005.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000226760.5"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000503569.5",
          "protein_id": "ENSP00000423337.1",
          "transcript_support_level": 1,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1457,
          "cdna_end": null,
          "cdna_length": 3255,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000503569.5"
        },
        {
          "aa_ref": "G",
          "aa_alt": "R",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.949G>A",
          "hgvs_p": "p.Gly317Arg",
          "transcript": "ENST00000673642.1",
          "protein_id": "ENSP00000501242.1",
          "transcript_support_level": null,
          "aa_start": 317,
          "aa_end": null,
          "aa_length": 427,
          "cds_start": 949,
          "cds_end": null,
          "cds_length": 1284,
          "cdna_start": 949,
          "cdna_end": null,
          "cdna_length": 2013,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000673642.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1383G>A",
          "hgvs_p": "p.Ser461Ser",
          "transcript": "ENST00000852027.1",
          "protein_id": "ENSP00000522086.1",
          "transcript_support_level": null,
          "aa_start": 461,
          "aa_end": null,
          "aa_length": 921,
          "cds_start": 1383,
          "cds_end": null,
          "cds_length": 2766,
          "cdna_start": 1546,
          "cdna_end": null,
          "cdna_length": 3726,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000852027.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1326G>A",
          "hgvs_p": "p.Ser442Ser",
          "transcript": "ENST00000673991.1",
          "protein_id": "ENSP00000501033.1",
          "transcript_support_level": null,
          "aa_start": 442,
          "aa_end": null,
          "aa_length": 902,
          "cds_start": 1326,
          "cds_end": null,
          "cds_length": 2709,
          "cdna_start": 1493,
          "cdna_end": null,
          "cdna_length": 3633,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000673991.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1326G>A",
          "hgvs_p": "p.Ser442Ser",
          "transcript": "ENST00000682275.1",
          "protein_id": "ENSP00000507852.1",
          "transcript_support_level": null,
          "aa_start": 442,
          "aa_end": null,
          "aa_length": 902,
          "cds_start": 1326,
          "cds_end": null,
          "cds_length": 2709,
          "cdna_start": 1496,
          "cdna_end": null,
          "cdna_length": 3662,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000682275.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1326G>A",
          "hgvs_p": "p.Ser442Ser",
          "transcript": "ENST00000852029.1",
          "protein_id": "ENSP00000522088.1",
          "transcript_support_level": null,
          "aa_start": 442,
          "aa_end": null,
          "aa_length": 902,
          "cds_start": 1326,
          "cds_end": null,
          "cds_length": 2709,
          "cdna_start": 1403,
          "cdna_end": null,
          "cdna_length": 3583,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000852029.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1326G>A",
          "hgvs_p": "p.Ser442Ser",
          "transcript": "ENST00000956586.1",
          "protein_id": "ENSP00000626645.1",
          "transcript_support_level": null,
          "aa_start": 442,
          "aa_end": null,
          "aa_length": 902,
          "cds_start": 1326,
          "cds_end": null,
          "cds_length": 2709,
          "cdna_start": 1385,
          "cdna_end": null,
          "cdna_length": 3565,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956586.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "NM_001145853.1",
          "protein_id": "NP_001139325.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1456,
          "cdna_end": null,
          "cdna_length": 3636,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001145853.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000684087.1",
          "protein_id": "ENSP00000506978.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1437,
          "cdna_end": null,
          "cdna_length": 3602,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000684087.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000852028.1",
          "protein_id": "ENSP00000522087.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1385,
          "cdna_end": null,
          "cdna_length": 3565,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000852028.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000938521.1",
          "protein_id": "ENSP00000608580.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1378,
          "cdna_end": null,
          "cdna_length": 3173,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000938521.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000956579.1",
          "protein_id": "ENSP00000626638.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1551,
          "cdna_end": null,
          "cdna_length": 3729,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956579.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000956583.1",
          "protein_id": "ENSP00000626642.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1330,
          "cdna_end": null,
          "cdna_length": 3510,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956583.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000956584.1",
          "protein_id": "ENSP00000626643.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1402,
          "cdna_end": null,
          "cdna_length": 3581,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956584.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser",
          "transcript": "ENST00000956585.1",
          "protein_id": "ENSP00000626644.1",
          "transcript_support_level": null,
          "aa_start": 430,
          "aa_end": null,
          "aa_length": 890,
          "cds_start": 1290,
          "cds_end": null,
          "cds_length": 2673,
          "cdna_start": 1414,
          "cdna_end": null,
          "cdna_length": 3593,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956585.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1281G>A",
          "hgvs_p": "p.Ser427Ser",
          "transcript": "ENST00000938520.1",
          "protein_id": "ENSP00000608579.1",
          "transcript_support_level": null,
          "aa_start": 427,
          "aa_end": null,
          "aa_length": 887,
          "cds_start": 1281,
          "cds_end": null,
          "cds_length": 2664,
          "cdna_start": 1462,
          "cdna_end": null,
          "cdna_length": 3257,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000938520.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1245G>A",
          "hgvs_p": "p.Ser415Ser",
          "transcript": "ENST00000956581.1",
          "protein_id": "ENSP00000626640.1",
          "transcript_support_level": null,
          "aa_start": 415,
          "aa_end": null,
          "aa_length": 875,
          "cds_start": 1245,
          "cds_end": null,
          "cds_length": 2628,
          "cdna_start": 1383,
          "cdna_end": null,
          "cdna_length": 3553,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000956581.1"
        },
        {
          "aa_ref": "S",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "WFS1",
          "gene_hgnc_id": 12762,
          "hgvs_c": "c.1209G>A",
          "hgvs_p": "p.Ser403Ser",
          "transcript": "ENST00000852030.1",
          "protein_id": "ENSP00000522089.1",
          "transcript_support_level": null,
          "aa_start": 403,
          "aa_end": null,
          "aa_length": 863,
          "cds_start": 1209,
          "cds_end": null,
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      "gnomad_exomes_ac": 16,
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      "gnomad_mito_homoplasmic": null,
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      "computational_score_selected": -0.8999999761581421,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.9,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -4.314,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -6,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4_Strong,BP6,BP7",
      "acmg_by_gene": [
        {
          "score": -6,
          "benign_score": 6,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BP7"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_006005.3",
          "gene_symbol": "WFS1",
          "hgnc_id": 12762,
          "effects": [
            "synonymous_variant"
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          "inheritance_mode": "AD,AR,Unknown",
          "hgvs_c": "c.1290G>A",
          "hgvs_p": "p.Ser430Ser"
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        {
          "score": -3,
          "benign_score": 5,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Strong",
            "BP6"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000661896.1",
          "gene_symbol": "ENSG00000286176",
          "hgnc_id": 58722,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.1337+2830C>T",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": " Dominant,Nonsyndromic Hearing Loss,WFS1-Related Spectrum Disorders,Wolfram syndrome 1,not provided,not specified",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:2 LB:2 B:1",
      "phenotype_combined": "not specified|Nonsyndromic Hearing Loss, Dominant|WFS1-Related Spectrum Disorders|not provided|Wolfram syndrome 1",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.