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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 4-73576675-G-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=73576675&ref=G&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "4",
      "pos": 73576675,
      "ref": "G",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_201431.2",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.778C>A",
          "hgvs_p": "p.Pro260Thr",
          "transcript": "NM_177532.5",
          "protein_id": "NP_803876.1",
          "transcript_support_level": null,
          "aa_start": 260,
          "aa_end": null,
          "aa_length": 337,
          "cds_start": 778,
          "cds_end": null,
          "cds_length": 1014,
          "cdna_start": 961,
          "cdna_end": null,
          "cdna_length": 5882,
          "mane_select": "ENST00000307439.10",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_177532.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.778C>A",
          "hgvs_p": "p.Pro260Thr",
          "transcript": "ENST00000307439.10",
          "protein_id": "ENSP00000303877.5",
          "transcript_support_level": 1,
          "aa_start": 260,
          "aa_end": null,
          "aa_length": 337,
          "cds_start": 778,
          "cds_end": null,
          "cds_length": 1014,
          "cdna_start": 961,
          "cdna_end": null,
          "cdna_length": 5882,
          "mane_select": "NM_177532.5",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000307439.10"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.742C>A",
          "hgvs_p": "p.Pro248Thr",
          "transcript": "ENST00000335049.5",
          "protein_id": "ENSP00000335582.5",
          "transcript_support_level": 1,
          "aa_start": 248,
          "aa_end": null,
          "aa_length": 325,
          "cds_start": 742,
          "cds_end": null,
          "cds_length": 978,
          "cdna_start": 742,
          "cdna_end": null,
          "cdna_length": 1360,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000335049.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.676C>A",
          "hgvs_p": "p.Pro226Thr",
          "transcript": "ENST00000395777.6",
          "protein_id": "ENSP00000379123.2",
          "transcript_support_level": 1,
          "aa_start": 226,
          "aa_end": null,
          "aa_length": 303,
          "cds_start": 676,
          "cds_end": null,
          "cds_length": 912,
          "cdna_start": 835,
          "cdna_end": null,
          "cdna_length": 2735,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000395777.6"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.874C>A",
          "hgvs_p": "p.Pro292Thr",
          "transcript": "NM_201431.2",
          "protein_id": "NP_958834.1",
          "transcript_support_level": null,
          "aa_start": 292,
          "aa_end": null,
          "aa_length": 369,
          "cds_start": 874,
          "cds_end": null,
          "cds_length": 1110,
          "cdna_start": 1005,
          "cdna_end": null,
          "cdna_length": 5926,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_201431.2"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.874C>A",
          "hgvs_p": "p.Pro292Thr",
          "transcript": "ENST00000342081.7",
          "protein_id": "ENSP00000340578.3",
          "transcript_support_level": 2,
          "aa_start": 292,
          "aa_end": null,
          "aa_length": 369,
          "cds_start": 874,
          "cds_end": null,
          "cds_length": 1110,
          "cdna_start": 1005,
          "cdna_end": null,
          "cdna_length": 4331,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000342081.7"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.823C>A",
          "hgvs_p": "p.Pro275Thr",
          "transcript": "ENST00000961593.1",
          "protein_id": "ENSP00000631652.1",
          "transcript_support_level": null,
          "aa_start": 275,
          "aa_end": null,
          "aa_length": 352,
          "cds_start": 823,
          "cds_end": null,
          "cds_length": 1059,
          "cdna_start": 992,
          "cdna_end": null,
          "cdna_length": 4331,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000961593.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.778C>A",
          "hgvs_p": "p.Pro260Thr",
          "transcript": "ENST00000853549.1",
          "protein_id": "ENSP00000523608.1",
          "transcript_support_level": null,
          "aa_start": 260,
          "aa_end": null,
          "aa_length": 337,
          "cds_start": 778,
          "cds_end": null,
          "cds_length": 1014,
          "cdna_start": 1236,
          "cdna_end": null,
          "cdna_length": 3128,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000853549.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.778C>A",
          "hgvs_p": "p.Pro260Thr",
          "transcript": "ENST00000853550.1",
          "protein_id": "ENSP00000523609.1",
          "transcript_support_level": null,
          "aa_start": 260,
          "aa_end": null,
          "aa_length": 337,
          "cds_start": 778,
          "cds_end": null,
          "cds_length": 1014,
          "cdna_start": 1089,
          "cdna_end": null,
          "cdna_length": 1943,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000853550.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 12,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.778C>A",
          "hgvs_p": "p.Pro260Thr",
          "transcript": "ENST00000961592.1",
          "protein_id": "ENSP00000631651.1",
          "transcript_support_level": null,
          "aa_start": 260,
          "aa_end": null,
          "aa_length": 337,
          "cds_start": 778,
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          "cds_length": 1014,
          "cdna_start": 1034,
          "cdna_end": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 11,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.778C>A",
          "hgvs_p": "p.Pro260Thr",
          "transcript": "ENST00000961596.1",
          "protein_id": "ENSP00000631655.1",
          "transcript_support_level": null,
          "aa_start": 260,
          "aa_end": null,
          "aa_length": 337,
          "cds_start": 778,
          "cds_end": null,
          "cds_length": 1014,
          "cdna_start": 848,
          "cdna_end": null,
          "cdna_length": 2230,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000961596.1"
        },
        {
          "aa_ref": "P",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "intron_rank": null,
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          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.742C>A",
          "hgvs_p": "p.Pro248Thr",
          "transcript": "NM_001270392.1",
          "protein_id": "NP_001257321.1",
          "transcript_support_level": null,
          "aa_start": 248,
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          "aa_length": 325,
          "cds_start": 742,
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          "cdna_start": 873,
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          "mane_select": null,
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        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
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          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.676C>A",
          "hgvs_p": "p.Pro226Thr",
          "transcript": "NM_001270391.2",
          "protein_id": "NP_001257320.1",
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          "cds_start": 676,
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          "cdna_start": 859,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001270391.2"
        },
        {
          "aa_ref": "P",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.676C>A",
          "hgvs_p": "p.Pro226Thr",
          "transcript": "ENST00000853548.1",
          "protein_id": "ENSP00000523607.1",
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        {
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          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000961594.1"
        },
        {
          "aa_ref": "P",
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          ],
          "exon_rank": 9,
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          "intron_rank": null,
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          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.676C>A",
          "hgvs_p": "p.Pro226Thr",
          "transcript": "ENST00000961595.1",
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        {
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          "intron_rank": null,
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          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.874C>A",
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          "transcript": "XM_011531687.3",
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        {
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          "biotype": "protein_coding",
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        },
        {
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          "protein_coding": true,
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          "consequences": [
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          ],
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          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "RASSF6",
          "gene_hgnc_id": 20796,
          "hgvs_c": "c.772C>A",
          "hgvs_p": "p.Pro258Thr",
          "transcript": "XM_011531689.4",
          "protein_id": "XP_011529991.1",
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      ],
      "gene_symbol": "RASSF6",
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      "computational_score_selected": 0.8973286151885986,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
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      "revel_prediction": "Uncertain_significance",
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      "alphamissense_prediction": null,
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      "spliceai_max_score": 0,
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      "acmg_score": 2,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PP3_Moderate",
      "acmg_by_gene": [
        {
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          "verdict": "Uncertain_significance",
          "transcript": "NM_201431.2",
          "gene_symbol": "RASSF6",
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      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
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