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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-77048402-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=77048402&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 77048402,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_006835.3",
"consequences": [
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.951G>A",
"hgvs_p": "p.Lys317Lys",
"transcript": "NM_006835.3",
"protein_id": "NP_006826.1",
"transcript_support_level": null,
"aa_start": 317,
"aa_end": null,
"aa_length": 377,
"cds_start": 951,
"cds_end": null,
"cds_length": 1134,
"cdna_start": 1512,
"cdna_end": null,
"cdna_length": 2759,
"mane_select": "ENST00000237654.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.951G>A",
"hgvs_p": "p.Lys317Lys",
"transcript": "ENST00000237654.9",
"protein_id": "ENSP00000237654.4",
"transcript_support_level": 1,
"aa_start": 317,
"aa_end": null,
"aa_length": 377,
"cds_start": 951,
"cds_end": null,
"cds_length": 1134,
"cdna_start": 1512,
"cdna_end": null,
"cdna_length": 2759,
"mane_select": "NM_006835.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.951G>A",
"hgvs_p": "p.Lys317Lys",
"transcript": "NM_001348132.2",
"protein_id": "NP_001335061.1",
"transcript_support_level": null,
"aa_start": 317,
"aa_end": null,
"aa_length": 377,
"cds_start": 951,
"cds_end": null,
"cds_length": 1134,
"cdna_start": 1508,
"cdna_end": null,
"cdna_length": 2755,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.951G>A",
"hgvs_p": "p.Lys317Lys",
"transcript": "NM_001348133.2",
"protein_id": "NP_001335062.1",
"transcript_support_level": null,
"aa_start": 317,
"aa_end": null,
"aa_length": 377,
"cds_start": 951,
"cds_end": null,
"cds_length": 1134,
"cdna_start": 1115,
"cdna_end": null,
"cdna_length": 2362,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.951G>A",
"hgvs_p": "p.Lys317Lys",
"transcript": "ENST00000718433.1",
"protein_id": "ENSP00000520818.1",
"transcript_support_level": null,
"aa_start": 317,
"aa_end": null,
"aa_length": 377,
"cds_start": 951,
"cds_end": null,
"cds_length": 1134,
"cdna_start": 1508,
"cdna_end": null,
"cdna_length": 2755,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.909G>A",
"hgvs_p": "p.Lys303Lys",
"transcript": "NM_001348134.2",
"protein_id": "NP_001335063.1",
"transcript_support_level": null,
"aa_start": 303,
"aa_end": null,
"aa_length": 363,
"cds_start": 909,
"cds_end": null,
"cds_length": 1092,
"cdna_start": 1355,
"cdna_end": null,
"cdna_length": 2602,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.909G>A",
"hgvs_p": "p.Lys303Lys",
"transcript": "ENST00000507788.3",
"protein_id": "ENSP00000421594.2",
"transcript_support_level": 4,
"aa_start": 303,
"aa_end": null,
"aa_length": 363,
"cds_start": 909,
"cds_end": null,
"cds_length": 1092,
"cdna_start": 1675,
"cdna_end": null,
"cdna_length": 2922,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.828G>A",
"hgvs_p": "p.Lys276Lys",
"transcript": "NM_001348135.2",
"protein_id": "NP_001335064.1",
"transcript_support_level": null,
"aa_start": 276,
"aa_end": null,
"aa_length": 336,
"cds_start": 828,
"cds_end": null,
"cds_length": 1011,
"cdna_start": 1389,
"cdna_end": null,
"cdna_length": 2636,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.822G>A",
"hgvs_p": "p.Lys274Lys",
"transcript": "NM_001348136.2",
"protein_id": "NP_001335065.1",
"transcript_support_level": null,
"aa_start": 274,
"aa_end": null,
"aa_length": 334,
"cds_start": 822,
"cds_end": null,
"cds_length": 1005,
"cdna_start": 1383,
"cdna_end": null,
"cdna_length": 2630,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.735G>A",
"hgvs_p": "p.Lys245Lys",
"transcript": "NM_001348137.2",
"protein_id": "NP_001335066.1",
"transcript_support_level": null,
"aa_start": 245,
"aa_end": null,
"aa_length": 305,
"cds_start": 735,
"cds_end": null,
"cds_length": 918,
"cdna_start": 1296,
"cdna_end": null,
"cdna_length": 2543,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.636G>A",
"hgvs_p": "p.Lys212Lys",
"transcript": "NM_001348138.2",
"protein_id": "NP_001335067.1",
"transcript_support_level": null,
"aa_start": 212,
"aa_end": null,
"aa_length": 272,
"cds_start": 636,
"cds_end": null,
"cds_length": 819,
"cdna_start": 1510,
"cdna_end": null,
"cdna_length": 2757,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.606G>A",
"hgvs_p": "p.Lys202Lys",
"transcript": "NM_001348139.2",
"protein_id": "NP_001335068.1",
"transcript_support_level": null,
"aa_start": 202,
"aa_end": null,
"aa_length": 262,
"cds_start": 606,
"cds_end": null,
"cds_length": 789,
"cdna_start": 1167,
"cdna_end": null,
"cdna_length": 2414,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "K",
"aa_alt": "K",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.348G>A",
"hgvs_p": "p.Lys116Lys",
"transcript": "ENST00000515468.1",
"protein_id": "ENSP00000425935.1",
"transcript_support_level": 3,
"aa_start": 116,
"aa_end": null,
"aa_length": 176,
"cds_start": 348,
"cds_end": null,
"cds_length": 531,
"cdna_start": 349,
"cdna_end": null,
"cdna_length": 636,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"hgvs_c": "c.*242G>A",
"hgvs_p": null,
"transcript": "NM_001348140.2",
"protein_id": "NP_001335069.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 209,
"cds_start": -4,
"cds_end": null,
"cds_length": 630,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2680,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CCNI",
"gene_hgnc_id": 1595,
"dbsnp": "rs763615986",
"frequency_reference_population": 0.0000020521493,
"hom_count_reference_population": 0,
"allele_count_reference_population": 3,
"gnomad_exomes_af": 0.00000205215,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 3,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.3179999887943268,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "REVEL",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.318,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.53,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.117,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 1,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP7",
"acmg_by_gene": [
{
"score": 1,
"benign_score": 1,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP7"
],
"verdict": "Uncertain_significance",
"transcript": "NM_006835.3",
"gene_symbol": "CCNI",
"hgnc_id": 1595,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.951G>A",
"hgvs_p": "p.Lys317Lys"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}