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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 4-88744042-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=4&pos=88744042&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "4",
"pos": 88744042,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000264344.10",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.2466+2890T>C",
"hgvs_p": null,
"transcript": "NM_014883.4",
"protein_id": "NP_055698.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1023,
"cds_start": -4,
"cds_end": null,
"cds_length": 3072,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5866,
"mane_select": "ENST00000264344.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 19,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.2466+2890T>C",
"hgvs_p": null,
"transcript": "ENST00000264344.10",
"protein_id": "ENSP00000264344.5",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1023,
"cds_start": -4,
"cds_end": null,
"cds_length": 3072,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5866,
"mane_select": "NM_014883.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1446+2890T>C",
"hgvs_p": null,
"transcript": "ENST00000503556.5",
"protein_id": "ENSP00000427189.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 683,
"cds_start": -4,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3386,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1488+2890T>C",
"hgvs_p": null,
"transcript": "ENST00000395002.6",
"protein_id": "ENSP00000378450.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 669,
"cds_start": -4,
"cds_end": null,
"cds_length": 2010,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4945,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1224+2890T>C",
"hgvs_p": null,
"transcript": "ENST00000511976.5",
"protein_id": "ENSP00000421914.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 609,
"cds_start": -4,
"cds_end": null,
"cds_length": 1830,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3579,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1488+2890T>C",
"hgvs_p": null,
"transcript": "NM_001015045.3",
"protein_id": "NP_001015045.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 697,
"cds_start": -4,
"cds_end": null,
"cds_length": 2094,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4895,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1488+2890T>C",
"hgvs_p": null,
"transcript": "ENST00000508369.5",
"protein_id": "ENSP00000421562.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 697,
"cds_start": -4,
"cds_end": null,
"cds_length": 2094,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3169,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1446+2890T>C",
"hgvs_p": null,
"transcript": "NM_001265578.2",
"protein_id": "NP_001252507.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 683,
"cds_start": -4,
"cds_end": null,
"cds_length": 2052,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4853,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1488+2890T>C",
"hgvs_p": null,
"transcript": "NM_001265579.2",
"protein_id": "NP_001252508.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 669,
"cds_start": -4,
"cds_end": null,
"cds_length": 2010,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4811,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1404+2890T>C",
"hgvs_p": null,
"transcript": "NM_001265580.2",
"protein_id": "NP_001252509.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 669,
"cds_start": -4,
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"cds_length": 2010,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4811,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.1404+2890T>C",
"hgvs_p": null,
"transcript": "ENST00000513837.5",
"protein_id": "ENSP00000423252.1",
"transcript_support_level": 2,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"canonical": false,
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
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"intron_rank_end": null,
"gene_symbol": "FAM13A",
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"hgvs_c": "n.*1148+2890T>C",
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"transcript": "ENST00000504836.5",
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"aa_start": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 7,
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"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "n.484+2890T>C",
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"transcript": "ENST00000508360.5",
"protein_id": null,
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},
{
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"strand": false,
"consequences": [
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],
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"gene_symbol": "FAM13A",
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"hgvs_c": "n.1456+2890T>C",
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"protein_id": null,
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},
{
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],
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"gene_symbol": "FAM13A",
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"hgvs_c": "c.2466+2890T>C",
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"transcript": "XM_011531516.2",
"protein_id": "XP_011529818.1",
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},
{
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"consequences": [
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],
"exon_rank": null,
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"intron_rank": 19,
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"gene_symbol": "FAM13A",
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"hgvs_c": "c.2424+2890T>C",
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"transcript": "XM_047449479.1",
"protein_id": "XP_047305435.1",
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},
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],
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"gene_symbol": "FAM13A",
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"hgvs_c": "c.2466+2890T>C",
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"transcript": "XM_005262683.4",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 18,
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"gene_symbol": "FAM13A",
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"hgvs_c": "c.2382+2890T>C",
"hgvs_p": null,
"transcript": "XM_011531517.3",
"protein_id": "XP_011529819.1",
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},
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"strand": false,
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],
"exon_rank": null,
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"gene_symbol": "FAM13A",
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"hgvs_c": "c.2424+2890T>C",
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},
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],
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"gene_symbol": "FAM13A",
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},
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],
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},
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 19,
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"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.2382+2890T>C",
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"transcript": "XM_047449481.1",
"protein_id": "XP_047305437.1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 21,
"intron_rank": 17,
"intron_rank_end": null,
"gene_symbol": "FAM13A",
"gene_hgnc_id": 19367,
"hgvs_c": "c.2340+2890T>C",
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"transcript": "XM_047449482.1",
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