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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-103003107-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=103003107&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "5",
      "pos": 103003107,
      "ref": "A",
      "alt": "G",
      "effect": "missense_variant",
      "transcript": "NM_001319943.1",
      "consequences": [
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "NM_001177306.2",
          "protein_id": "NP_001170777.1",
          "transcript_support_level": null,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 973,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2922,
          "cdna_start": 2105,
          "cdna_end": null,
          "cdna_length": 3990,
          "mane_select": "ENST00000438793.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001177306.2"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000438793.8",
          "protein_id": "ENSP00000396493.3",
          "transcript_support_level": 1,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 973,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2922,
          "cdna_start": 2105,
          "cdna_end": null,
          "cdna_length": 3990,
          "mane_select": "NM_001177306.2",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000438793.8"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000304400.12",
          "protein_id": "ENSP00000306100.8",
          "transcript_support_level": 1,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 973,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2922,
          "cdna_start": 2112,
          "cdna_end": null,
          "cdna_length": 3832,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000304400.12"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000455264.7",
          "protein_id": "ENSP00000403461.2",
          "transcript_support_level": 1,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 905,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2718,
          "cdna_start": 2105,
          "cdna_end": null,
          "cdna_length": 3430,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000455264.7"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 16,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1367A>G",
          "hgvs_p": "p.Asp456Gly",
          "transcript": "ENST00000348126.7",
          "protein_id": "ENSP00000314638.3",
          "transcript_support_level": 1,
          "aa_start": 456,
          "aa_end": null,
          "aa_length": 866,
          "cds_start": 1367,
          "cds_end": null,
          "cds_length": 2601,
          "cdna_start": 1767,
          "cdna_end": null,
          "cdna_length": 3649,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000348126.7"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1742A>G",
          "hgvs_p": "p.Asp581Gly",
          "transcript": "ENST00000890197.1",
          "protein_id": "ENSP00000560256.1",
          "transcript_support_level": null,
          "aa_start": 581,
          "aa_end": null,
          "aa_length": 992,
          "cds_start": 1742,
          "cds_end": null,
          "cds_length": 2979,
          "cdna_start": 2305,
          "cdna_end": null,
          "cdna_length": 4193,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000890197.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000890198.1",
          "protein_id": "ENSP00000560257.1",
          "transcript_support_level": null,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 992,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2979,
          "cdna_start": 2161,
          "cdna_end": null,
          "cdna_length": 4103,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000890198.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1742A>G",
          "hgvs_p": "p.Asp581Gly",
          "transcript": "NM_001319943.1",
          "protein_id": "NP_001306872.1",
          "transcript_support_level": null,
          "aa_start": 581,
          "aa_end": null,
          "aa_length": 991,
          "cds_start": 1742,
          "cds_end": null,
          "cds_length": 2976,
          "cdna_start": 2681,
          "cdna_end": null,
          "cdna_length": 5955,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001319943.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1742A>G",
          "hgvs_p": "p.Asp581Gly",
          "transcript": "ENST00000890204.1",
          "protein_id": "ENSP00000560263.1",
          "transcript_support_level": null,
          "aa_start": 581,
          "aa_end": null,
          "aa_length": 991,
          "cds_start": 1742,
          "cds_end": null,
          "cds_length": 2976,
          "cdna_start": 2163,
          "cdna_end": null,
          "cdna_length": 4050,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000890204.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1742A>G",
          "hgvs_p": "p.Asp581Gly",
          "transcript": "ENST00000957519.1",
          "protein_id": "ENSP00000627578.1",
          "transcript_support_level": null,
          "aa_start": 581,
          "aa_end": null,
          "aa_length": 991,
          "cds_start": 1742,
          "cds_end": null,
          "cds_length": 2976,
          "cdna_start": 2367,
          "cdna_end": null,
          "cdna_length": 4251,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957519.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1742A>G",
          "hgvs_p": "p.Asp581Gly",
          "transcript": "ENST00000890210.1",
          "protein_id": "ENSP00000560269.1",
          "transcript_support_level": null,
          "aa_start": 581,
          "aa_end": null,
          "aa_length": 990,
          "cds_start": 1742,
          "cds_end": null,
          "cds_length": 2973,
          "cdna_start": 2143,
          "cdna_end": null,
          "cdna_length": 4026,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000890210.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 18,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1721A>G",
          "hgvs_p": "p.Asp574Gly",
          "transcript": "ENST00000939736.1",
          "protein_id": "ENSP00000609795.1",
          "transcript_support_level": null,
          "aa_start": 574,
          "aa_end": null,
          "aa_length": 983,
          "cds_start": 1721,
          "cds_end": null,
          "cds_length": 2952,
          "cdna_start": 2129,
          "cdna_end": null,
          "cdna_length": 4005,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000939736.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000957489.1",
          "protein_id": "ENSP00000627548.1",
          "transcript_support_level": null,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 983,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2952,
          "cdna_start": 2201,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000957489.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000957494.1",
          "protein_id": "ENSP00000627553.1",
          "transcript_support_level": null,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 982,
          "cds_start": 1688,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
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          "consequences": [
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          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000957509.1",
          "protein_id": "ENSP00000627568.1",
          "transcript_support_level": null,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 978,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2937,
          "cdna_start": 2089,
          "cdna_end": null,
          "cdna_length": 3986,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000957509.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000957490.1",
          "protein_id": "ENSP00000627549.1",
          "transcript_support_level": null,
          "aa_start": 563,
          "aa_end": null,
          "aa_length": 975,
          "cds_start": 1688,
          "cds_end": null,
          "cds_length": 2928,
          "cdna_start": 2152,
          "cdna_end": null,
          "cdna_length": 4041,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000957490.1"
        },
        {
          "aa_ref": "D",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "NM_000919.4",
          "protein_id": "NP_000910.2",
          "transcript_support_level": null,
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          "mane_select": null,
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        {
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          ],
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          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000684529.1",
          "protein_id": "ENSP00000507038.1",
          "transcript_support_level": null,
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          "biotype": "protein_coding",
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        {
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          ],
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          "intron_rank": null,
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          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1691A>G",
          "hgvs_p": "p.Asp564Gly",
          "transcript": "ENST00000890211.1",
          "protein_id": "ENSP00000560270.1",
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          "aa_length": 974,
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          "cds_length": 2925,
          "cdna_start": 2092,
          "cdna_end": null,
          "cdna_length": 3969,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000890211.1"
        },
        {
          "aa_ref": "D",
          "aa_alt": "G",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PAM",
          "gene_hgnc_id": 8596,
          "hgvs_c": "c.1688A>G",
          "hgvs_p": "p.Asp563Gly",
          "transcript": "ENST00000890215.1",
          "protein_id": "ENSP00000560274.1",
          "transcript_support_level": null,
          "aa_start": 563,
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          "aa_length": 974,
          "cds_start": 1688,
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      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
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      "custom_annotations": null
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  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.