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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-10981586-AAC-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=10981586&ref=AAC&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "5",
      "pos": 10981586,
      "ref": "AAC",
      "alt": "A",
      "effect": "intron_variant",
      "transcript": "NM_001332.4",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 21,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3417+185_3417+186delGT",
          "hgvs_p": null,
          "transcript": "NM_001332.4",
          "protein_id": "NP_001323.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1225,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3678,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000304623.13",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001332.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 21,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3417+185_3417+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000304623.13",
          "protein_id": "ENSP00000307134.8",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1225,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3678,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_001332.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000304623.13"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 20,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3144+185_3144+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000511377.5",
          "protein_id": "ENSP00000426510.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1134,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3405,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000511377.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 21,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "n.*119+185_*119+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000513588.5",
          "protein_id": "ENSP00000421093.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000513588.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 21,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3360+185_3360+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000954646.1",
          "protein_id": "ENSP00000624705.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1206,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3621,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954646.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 20,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3285+185_3285+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000923862.1",
          "protein_id": "ENSP00000593921.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1181,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3546,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000923862.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 20,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3243+185_3243+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000954647.1",
          "protein_id": "ENSP00000624706.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1167,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3504,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000954647.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 20,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3144+185_3144+186delGT",
          "hgvs_p": null,
          "transcript": "NM_001288715.1",
          "protein_id": "NP_001275644.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1134,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 3405,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001288715.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": 16,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2562+185_2562+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000706272.1",
          "protein_id": "ENSP00000516316.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 940,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2823,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000706272.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 19,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2481+185_2481+186delGT",
          "hgvs_p": null,
          "transcript": "NM_001364128.2",
          "protein_id": "NP_001351057.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 913,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2742,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001364128.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": 19,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2481+185_2481+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000706271.1",
          "protein_id": "ENSP00000516315.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 913,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2742,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000706271.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 18,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2406+185_2406+186delGT",
          "hgvs_p": null,
          "transcript": "NM_001288716.1",
          "protein_id": "NP_001275645.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 888,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2667,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001288716.1"
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": 18,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2406+185_2406+186delGT",
          "hgvs_p": null,
          "transcript": "ENST00000503622.5",
          "protein_id": "ENSP00000426887.1",
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 888,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2667,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000503622.5"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 21,
          "intron_rank": 20,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2118+185_2118+186delGT",
          "hgvs_p": null,
          "transcript": "NM_001288717.2",
          "protein_id": "NP_001275646.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 792,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2379,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001288717.2"
        },
        {
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 23,
          "intron_rank": 22,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3492+185_3492+186delGT",
          "hgvs_p": null,
          "transcript": "XM_005248251.4",
          "protein_id": "XP_005248308.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 1250,
          "cds_start": null,
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          "cds_length": 3753,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_005248251.4"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 21,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3219+185_3219+186delGT",
          "hgvs_p": null,
          "transcript": "XM_005248253.2",
          "protein_id": "XP_005248310.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1159,
          "cds_start": null,
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          "cds_length": 3480,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_005248253.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
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          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 21,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.3219+185_3219+186delGT",
          "hgvs_p": null,
          "transcript": "XM_011513967.3",
          "protein_id": "XP_011512269.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 1159,
          "cds_start": null,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "strand": false,
          "consequences": [
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          ],
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          "exon_count": 21,
          "intron_rank": 20,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2754+185_2754+186delGT",
          "hgvs_p": null,
          "transcript": "XM_017009072.2",
          "protein_id": "XP_016864561.1",
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          "aa_start": null,
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          "cds_start": null,
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          "cds_length": 3015,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "XM_017009072.2"
        },
        {
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          "canonical": false,
          "protein_coding": true,
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          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 20,
          "intron_rank": 19,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.2679+185_2679+186delGT",
          "hgvs_p": null,
          "transcript": "XM_017009074.2",
          "protein_id": "XP_016864563.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": 979,
          "cds_start": null,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_017009074.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 14,
          "intron_rank_end": null,
          "gene_symbol": "CTNND2",
          "gene_hgnc_id": 2516,
          "hgvs_c": "c.1821+185_1821+186delGT",
          "hgvs_p": null,
          "transcript": "XM_047416777.1",
          "protein_id": "XP_047272733.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 693,
          "cds_start": null,
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          "cds_length": 2082,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047416777.1"
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        {
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      "gene_symbol": "CTNND2",
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      "dbsnp": "rs112742699",
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      "gnomad_exomes_af": null,
      "gnomad_genomes_af": 0.000239859,
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      "gnomad_genomes_ac": 36,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": -0.535,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 0,
          "pathogenic_score": 0,
          "criteria": [],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001332.4",
          "gene_symbol": "CTNND2",
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          "effects": [
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          "inheritance_mode": "AD",
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        },
        {
          "score": 0,
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          "criteria": [],
          "verdict": "Uncertain_significance",
          "transcript": "XR_925791.3",
          "gene_symbol": "LOC105374654",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.536-2577_536-2576delCA",
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        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}