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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-122425326-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=122425326&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 122425326,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000261368.13",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.1003-26G>A",
"hgvs_p": null,
"transcript": "NM_005460.4",
"protein_id": "NP_005451.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 919,
"cds_start": -4,
"cds_end": null,
"cds_length": 2760,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3577,
"mane_select": "ENST00000261368.13",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.1003-26G>A",
"hgvs_p": null,
"transcript": "ENST00000261368.13",
"protein_id": "ENSP00000261368.8",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 919,
"cds_start": -4,
"cds_end": null,
"cds_length": 2760,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3577,
"mane_select": "NM_005460.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.1144-26G>A",
"hgvs_p": null,
"transcript": "ENST00000261367.11",
"protein_id": "ENSP00000261367.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1016,
"cds_start": -4,
"cds_end": null,
"cds_length": 3051,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4986,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "n.131-6643G>A",
"hgvs_p": null,
"transcript": "ENST00000508017.5",
"protein_id": "ENSP00000424338.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2410,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "n.1097-26G>A",
"hgvs_p": null,
"transcript": "ENST00000510003.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2039,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "n.131-6643G>A",
"hgvs_p": null,
"transcript": "ENST00000512385.5",
"protein_id": "ENSP00000426280.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2564,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.1144-26G>A",
"hgvs_p": null,
"transcript": "NM_001308100.2",
"protein_id": "NP_001295029.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1016,
"cds_start": -4,
"cds_end": null,
"cds_length": 3051,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5093,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.1002+1587G>A",
"hgvs_p": null,
"transcript": "NM_001308105.1",
"protein_id": "NP_001295034.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 859,
"cds_start": -4,
"cds_end": null,
"cds_length": 2580,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3349,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.1002+1587G>A",
"hgvs_p": null,
"transcript": "ENST00000509154.6",
"protein_id": "ENSP00000422106.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 857,
"cds_start": -4,
"cds_end": null,
"cds_length": 2574,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2807,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.85-26G>A",
"hgvs_p": null,
"transcript": "NM_001308108.1",
"protein_id": "NP_001295037.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 613,
"cds_start": -4,
"cds_end": null,
"cds_length": 1842,
"cdna_start": null,
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"cdna_length": 2657,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "c.85-6643G>A",
"hgvs_p": null,
"transcript": "NM_001242935.3",
"protein_id": "NP_001229864.1",
"transcript_support_level": null,
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"cds_start": -4,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
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"gene_symbol": "SNCAIP",
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"hgvs_c": "c.85-6643G>A",
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"transcript": "NM_001308107.2",
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},
{
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"strand": true,
"consequences": [
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],
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"exon_count": 9,
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"gene_symbol": "SNCAIP",
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"hgvs_c": "c.79-6643G>A",
"hgvs_p": null,
"transcript": "NM_001308106.1",
"protein_id": "NP_001295035.1",
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},
{
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"strand": true,
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],
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"gene_symbol": "SNCAIP",
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"hgvs_c": "c.85-15303G>A",
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"transcript": "NM_001308109.2",
"protein_id": "NP_001295038.1",
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},
{
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],
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"gene_symbol": "SNCAIP",
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"transcript": "ENST00000395466.6",
"protein_id": "ENSP00000378849.2",
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},
{
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"strand": true,
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],
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"exon_count": 13,
"intron_rank": 4,
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"gene_symbol": "SNCAIP",
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"hgvs_c": "n.1144-26G>A",
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"transcript": "ENST00000395469.6",
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},
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],
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"gene_symbol": "SNCAIP",
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"hgvs_c": "n.131-15303G>A",
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"transcript": "ENST00000509023.5",
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},
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"strand": true,
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],
"exon_rank": null,
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"intron_rank": 3,
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"gene_symbol": "SNCAIP",
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"hgvs_c": "n.131-6643G>A",
"hgvs_p": null,
"transcript": "ENST00000510658.5",
"protein_id": "ENSP00000426526.1",
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},
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"protein_coding": false,
"strand": true,
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 3,
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"gene_symbol": "SNCAIP",
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"hgvs_c": "n.272-6643G>A",
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"transcript": "ENST00000512146.6",
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},
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],
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"transcript": "ENST00000515215.6",
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},
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],
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"gene_symbol": "SNCAIP",
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},
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 4,
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"gene_symbol": "SNCAIP",
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"hgvs_c": "n.1190-26G>A",
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"transcript": "NR_131761.1",
"protein_id": null,
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"biotype": null,
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},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "SNCAIP",
"gene_hgnc_id": 11139,
"hgvs_c": "n.269-6643G>A",
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"transcript": "NR_131762.1",
"protein_id": null,
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},
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