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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-123346699-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=123346699&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 123346699,
"ref": "T",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_001375405.1",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2781A>T",
"hgvs_p": "p.Gly927Gly",
"transcript": "NM_001375405.1",
"protein_id": "NP_001362334.1",
"transcript_support_level": null,
"aa_start": 927,
"aa_end": null,
"aa_length": 986,
"cds_start": 2781,
"cds_end": null,
"cds_length": 2961,
"cdna_start": 3186,
"cdna_end": null,
"cdna_length": 4993,
"mane_select": "ENST00000306467.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2781A>T",
"hgvs_p": "p.Gly927Gly",
"transcript": "ENST00000306467.10",
"protein_id": "ENSP00000303058.6",
"transcript_support_level": 5,
"aa_start": 927,
"aa_end": null,
"aa_length": 986,
"cds_start": 2781,
"cds_end": null,
"cds_length": 2961,
"cdna_start": 3186,
"cdna_end": null,
"cdna_length": 4993,
"mane_select": "NM_001375405.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.*2353A>T",
"hgvs_p": null,
"transcript": "ENST00000508138.5",
"protein_id": "ENSP00000422234.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4720,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.*2185A>T",
"hgvs_p": null,
"transcript": "ENST00000513565.6",
"protein_id": "ENSP00000422089.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3973,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.*2353A>T",
"hgvs_p": null,
"transcript": "ENST00000508138.5",
"protein_id": "ENSP00000422234.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4720,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.*2185A>T",
"hgvs_p": null,
"transcript": "ENST00000513565.6",
"protein_id": "ENSP00000422089.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3973,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2781A>T",
"hgvs_p": "p.Gly927Gly",
"transcript": "NM_153223.4",
"protein_id": "NP_694955.2",
"transcript_support_level": null,
"aa_start": 927,
"aa_end": null,
"aa_length": 986,
"cds_start": 2781,
"cds_end": null,
"cds_length": 2961,
"cdna_start": 3147,
"cdna_end": null,
"cdna_length": 4954,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2781A>T",
"hgvs_p": "p.Gly927Gly",
"transcript": "ENST00000328236.10",
"protein_id": "ENSP00000327504.5",
"transcript_support_level": 5,
"aa_start": 927,
"aa_end": null,
"aa_length": 986,
"cds_start": 2781,
"cds_end": null,
"cds_length": 2961,
"cdna_start": 2863,
"cdna_end": null,
"cdna_length": 4667,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2703A>T",
"hgvs_p": "p.Gly901Gly",
"transcript": "NM_001166226.2",
"protein_id": "NP_001159698.1",
"transcript_support_level": null,
"aa_start": 901,
"aa_end": null,
"aa_length": 960,
"cds_start": 2703,
"cds_end": null,
"cds_length": 2883,
"cdna_start": 3066,
"cdna_end": null,
"cdna_length": 4873,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2703A>T",
"hgvs_p": "p.Gly901Gly",
"transcript": "ENST00000306481.11",
"protein_id": "ENSP00000307419.6",
"transcript_support_level": 5,
"aa_start": 901,
"aa_end": null,
"aa_length": 960,
"cds_start": 2703,
"cds_end": null,
"cds_length": 2883,
"cdna_start": 2816,
"cdna_end": null,
"cdna_length": 4620,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2703A>T",
"hgvs_p": "p.Gly901Gly",
"transcript": "ENST00000508442.7",
"protein_id": "ENSP00000421620.3",
"transcript_support_level": 2,
"aa_start": 901,
"aa_end": null,
"aa_length": 960,
"cds_start": 2703,
"cds_end": null,
"cds_length": 2883,
"cdna_start": 3231,
"cdna_end": null,
"cdna_length": 5035,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2682A>T",
"hgvs_p": "p.Gly894Gly",
"transcript": "ENST00000675442.1",
"protein_id": "ENSP00000502221.1",
"transcript_support_level": null,
"aa_start": 894,
"aa_end": null,
"aa_length": 953,
"cds_start": 2682,
"cds_end": null,
"cds_length": 2862,
"cdna_start": 3210,
"cdna_end": null,
"cdna_length": 5014,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2646A>T",
"hgvs_p": "p.Gly882Gly",
"transcript": "NM_001375406.1",
"protein_id": "NP_001362335.1",
"transcript_support_level": null,
"aa_start": 882,
"aa_end": null,
"aa_length": 941,
"cds_start": 2646,
"cds_end": null,
"cds_length": 2826,
"cdna_start": 3051,
"cdna_end": null,
"cdna_length": 4858,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2646A>T",
"hgvs_p": "p.Gly882Gly",
"transcript": "ENST00000675330.1",
"protein_id": "ENSP00000502634.1",
"transcript_support_level": null,
"aa_start": 882,
"aa_end": null,
"aa_length": 941,
"cds_start": 2646,
"cds_end": null,
"cds_length": 2826,
"cdna_start": 3069,
"cdna_end": null,
"cdna_length": 4873,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2208A>T",
"hgvs_p": "p.Gly736Gly",
"transcript": "NM_001375408.1",
"protein_id": "NP_001362337.1",
"transcript_support_level": null,
"aa_start": 736,
"aa_end": null,
"aa_length": 795,
"cds_start": 2208,
"cds_end": null,
"cds_length": 2388,
"cdna_start": 3322,
"cdna_end": null,
"cdna_length": 5129,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2208A>T",
"hgvs_p": "p.Gly736Gly",
"transcript": "NM_001375409.1",
"protein_id": "NP_001362338.1",
"transcript_support_level": null,
"aa_start": 736,
"aa_end": null,
"aa_length": 795,
"cds_start": 2208,
"cds_end": null,
"cds_length": 2388,
"cdna_start": 3303,
"cdna_end": null,
"cdna_length": 5110,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2703A>T",
"hgvs_p": "p.Gly901Gly",
"transcript": "XM_011543185.3",
"protein_id": "XP_011541487.1",
"transcript_support_level": null,
"aa_start": 901,
"aa_end": null,
"aa_length": 960,
"cds_start": 2703,
"cds_end": null,
"cds_length": 2883,
"cdna_start": 3130,
"cdna_end": null,
"cdna_length": 4937,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.2568A>T",
"hgvs_p": "p.Gly856Gly",
"transcript": "XM_047416803.1",
"protein_id": "XP_047272759.1",
"transcript_support_level": null,
"aa_start": 856,
"aa_end": null,
"aa_length": 915,
"cds_start": 2568,
"cds_end": null,
"cds_length": 2748,
"cdna_start": 2997,
"cdna_end": null,
"cdna_length": 4804,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "G",
"aa_alt": "G",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "c.1314A>T",
"hgvs_p": "p.Gly438Gly",
"transcript": "XM_017009085.2",
"protein_id": "XP_016864574.1",
"transcript_support_level": null,
"aa_start": 438,
"aa_end": null,
"aa_length": 497,
"cds_start": 1314,
"cds_end": null,
"cds_length": 1494,
"cdna_start": 1436,
"cdna_end": null,
"cdna_length": 3243,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.*2132A>T",
"hgvs_p": null,
"transcript": "ENST00000674620.1",
"protein_id": "ENSP00000501651.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4962,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.*1442A>T",
"hgvs_p": null,
"transcript": "ENST00000674667.1",
"protein_id": "ENSP00000502819.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5136,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 16,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.3279A>T",
"hgvs_p": null,
"transcript": "ENST00000675003.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5083,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CEP120",
"gene_hgnc_id": 26690,
"hgvs_c": "n.*1442A>T",
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}
],
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}