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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-132747824-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=132747824&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 132747824,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_001287252.2",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "NM_001039780.4",
"protein_id": "NP_001034869.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 369,
"cds_start": 329,
"cds_end": null,
"cds_length": 1110,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000378731.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001039780.4"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "ENST00000378731.6",
"protein_id": "ENSP00000368005.1",
"transcript_support_level": 1,
"aa_start": 110,
"aa_end": null,
"aa_length": 369,
"cds_start": 329,
"cds_end": null,
"cds_length": 1110,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001039780.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000378731.6"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "ENST00000614847.1",
"protein_id": "ENSP00000478257.1",
"transcript_support_level": 1,
"aa_start": 110,
"aa_end": null,
"aa_length": 385,
"cds_start": 329,
"cds_end": null,
"cds_length": 1158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000614847.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "ENST00000878149.1",
"protein_id": "ENSP00000548208.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 398,
"cds_start": 329,
"cds_end": null,
"cds_length": 1197,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878149.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "ENST00000878146.1",
"protein_id": "ENSP00000548205.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 386,
"cds_start": 329,
"cds_end": null,
"cds_length": 1161,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878146.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "NM_001287252.2",
"protein_id": "NP_001274181.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 385,
"cds_start": 329,
"cds_end": null,
"cds_length": 1158,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001287252.2"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "ENST00000971609.1",
"protein_id": "ENSP00000641668.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 382,
"cds_start": 329,
"cds_end": null,
"cds_length": 1149,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000971609.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "NM_001287253.2",
"protein_id": "NP_001274182.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 370,
"cds_start": 329,
"cds_end": null,
"cds_length": 1113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001287253.2"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "ENST00000878148.1",
"protein_id": "ENSP00000548207.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 293,
"cds_start": 329,
"cds_end": null,
"cds_length": 882,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878148.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "ENST00000878147.1",
"protein_id": "ENSP00000548206.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 292,
"cds_start": 329,
"cds_end": null,
"cds_length": 879,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000878147.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "XM_047417521.1",
"protein_id": "XP_047273477.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 299,
"cds_start": 329,
"cds_end": null,
"cds_length": 900,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047417521.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "XM_047417522.1",
"protein_id": "XP_047273478.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 292,
"cds_start": 329,
"cds_end": null,
"cds_length": 879,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047417522.1"
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu",
"transcript": "XM_047417523.1",
"protein_id": "XP_047273479.1",
"transcript_support_level": null,
"aa_start": 110,
"aa_end": null,
"aa_length": 265,
"cds_start": 329,
"cds_end": null,
"cds_length": 798,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047417523.1"
}
],
"gene_symbol": "CCNI2",
"gene_hgnc_id": 33869,
"dbsnp": "rs933932444",
"frequency_reference_population": 0.000020254887,
"hom_count_reference_population": 0,
"allele_count_reference_population": 30,
"gnomad_exomes_af": 0.0000195649,
"gnomad_genomes_af": 0.0000262791,
"gnomad_exomes_ac": 26,
"gnomad_genomes_ac": 4,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.062053561210632324,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.013,
"revel_prediction": "Benign",
"alphamissense_score": 0.1095,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.66,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.445,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_001287252.2",
"gene_symbol": "CCNI2",
"hgnc_id": 33869,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.329C>T",
"hgvs_p": "p.Pro110Leu"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}