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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-138924556-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=138924556&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 9,
          "criteria": [
            "PP3_Moderate",
            "BP6",
            "BS1",
            "BS2"
          ],
          "effects": [
            "synonymous_variant"
          ],
          "gene_symbol": "CTNNA1",
          "hgnc_id": 2509,
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "inheritance_mode": "AD,Unknown",
          "pathogenic_score": 2,
          "score": -7,
          "transcript": "NM_001903.5",
          "verdict": "Benign"
        }
      ],
      "acmg_classification": "Benign",
      "acmg_criteria": "PP3_Moderate,BP6,BS1,BS2",
      "acmg_score": -7,
      "allele_count_reference_population": 71,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "G",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.53,
      "chr": "5",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_disease": "Hereditary cancer-predisposing syndrome,Hereditary diffuse gastric adenocarcinoma,not provided",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:1 LB:2 B:1",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": -0.5299999713897705,
      "computational_source_selected": "BayesDel_noAF",
      "consequences": [
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3754,
          "cdna_start": 1681,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 18,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "NM_001903.5",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000302763.12",
          "protein_coding": true,
          "protein_id": "NP_001894.2",
          "strand": true,
          "transcript": "NM_001903.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3754,
          "cdna_start": 1681,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 18,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000302763.12",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001903.5",
          "protein_coding": true,
          "protein_id": "ENSP00000304669.7",
          "strand": true,
          "transcript": "ENST00000302763.12",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 841,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3536,
          "cdna_start": 1595,
          "cds_end": null,
          "cds_length": 2526,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 18,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000518825.5",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000427821.1",
          "strand": true,
          "transcript": "ENST00000518825.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 536,
          "aa_ref": "Q",
          "aa_start": 161,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2684,
          "cdna_start": 617,
          "cds_end": null,
          "cds_length": 1611,
          "cds_start": 483,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 12,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000540387.5",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.483A>G",
          "hgvs_p": "p.Gln161Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000438476.1",
          "strand": true,
          "transcript": "ENST00000540387.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 959,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3951,
          "cdna_start": 1715,
          "cds_end": null,
          "cds_length": 2880,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000965845.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000635904.1",
          "strand": true,
          "transcript": "ENST00000965845.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 954,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3878,
          "cdna_start": 1661,
          "cds_end": null,
          "cds_length": 2865,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 18,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000930310.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000600369.1",
          "strand": true,
          "transcript": "ENST00000930310.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4224,
          "cdna_start": 2151,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "NM_001323982.2",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001310911.1",
          "strand": true,
          "transcript": "NM_001323982.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3945,
          "cdna_start": 1872,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 18,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "NM_001323983.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001310912.1",
          "strand": true,
          "transcript": "NM_001323983.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3772,
          "cdna_start": 1699,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "NM_001323984.2",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001310913.1",
          "strand": true,
          "transcript": "NM_001323984.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3951,
          "cdna_start": 1879,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000889697.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559756.1",
          "strand": true,
          "transcript": "ENST00000889697.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3854,
          "cdna_start": 1781,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000889698.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559757.1",
          "strand": true,
          "transcript": "ENST00000889698.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4215,
          "cdna_start": 2142,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000889703.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559762.1",
          "strand": true,
          "transcript": "ENST00000889703.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3785,
          "cdna_start": 1712,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
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          "feature": "ENST00000889706.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559765.1",
          "strand": true,
          "transcript": "ENST00000889706.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
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          "aa_length": 906,
          "aa_ref": "Q",
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3855,
          "cdna_start": 1784,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000889707.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559766.1",
          "strand": true,
          "transcript": "ENST00000889707.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
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          "aa_length": 906,
          "aa_ref": "Q",
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          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3813,
          "cdna_start": 1744,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
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          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000889708.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559767.1",
          "strand": true,
          "transcript": "ENST00000889708.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4290,
          "cdna_start": 2221,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
          "exon_rank": 13,
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          "feature": "ENST00000889709.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
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          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559768.1",
          "strand": true,
          "transcript": "ENST00000889709.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
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          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4220,
          "cdna_start": 2151,
          "cds_end": null,
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          "cds_start": 1593,
          "consequences": [
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          ],
          "exon_count": 19,
          "exon_rank": 13,
          "exon_rank_end": null,
          "feature": "ENST00000889710.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559769.1",
          "strand": true,
          "transcript": "ENST00000889710.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
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          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4051,
          "cdna_start": 1980,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 18,
          "exon_rank": 12,
          "exon_rank_end": null,
          "feature": "ENST00000889712.1",
          "gene_hgnc_id": 2509,
          "gene_symbol": "CTNNA1",
          "hgvs_c": "c.1593A>G",
          "hgvs_p": "p.Gln531Gln",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000559771.1",
          "strand": true,
          "transcript": "ENST00000889712.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "Q",
          "aa_end": null,
          "aa_length": 906,
          "aa_ref": "Q",
          "aa_start": 531,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3438,
          "cdna_start": 1687,
          "cds_end": null,
          "cds_length": 2721,
          "cds_start": 1593,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 19,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.