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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-139325572-AAC-TCT (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=139325572&ref=AAC&alt=TCT&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "MATR3",
          "hgnc_id": 6912,
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "inheritance_mode": "AD",
          "pathogenic_score": 0,
          "score": 0,
          "transcript": "NM_001400441.1",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "",
      "acmg_score": 0,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "TCT",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": null,
      "bayesdelnoaf_score": null,
      "chr": "5",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": null,
      "computational_score_selected": null,
      "computational_source_selected": null,
      "consequences": [
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 847,
          "aa_ref": "N",
          "aa_start": 761,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5069,
          "cdna_start": 2524,
          "cds_end": null,
          "cds_length": 2544,
          "cds_start": 2281,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_018834.6",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2281_2283delAACinsTCT",
          "hgvs_p": "p.Asn761Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000394805.8",
          "protein_coding": true,
          "protein_id": "NP_061322.2",
          "strand": true,
          "transcript": "NM_018834.6",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 847,
          "aa_ref": "N",
          "aa_start": 761,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 5069,
          "cdna_start": 2524,
          "cds_end": null,
          "cds_length": 2544,
          "cds_start": 2281,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000394805.8",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2281_2283delAACinsTCT",
          "hgvs_p": "p.Asn761Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_018834.6",
          "protein_coding": true,
          "protein_id": "ENSP00000378284.3",
          "strand": true,
          "transcript": "ENST00000394805.8",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 4373,
          "cdna_start": 3077,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 20,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000502929.5",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000422319.1",
          "strand": true,
          "transcript": "ENST00000502929.5",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 847,
          "aa_ref": "N",
          "aa_start": 761,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4018,
          "cdna_start": 2709,
          "cds_end": null,
          "cds_length": 2544,
          "cds_start": 2281,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000618441.5",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2281_2283delAACinsTCT",
          "hgvs_p": "p.Asn761Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000482895.1",
          "strand": true,
          "transcript": "ENST00000618441.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2250,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 11,
          "exon_rank": 9,
          "exon_rank_end": null,
          "feature": "ENST00000502422.5",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "n.1734_1736delAACinsTCT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000502422.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 7306,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 13,
          "exon_rank": 11,
          "exon_rank_end": null,
          "feature": "ENST00000505625.5",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "n.6001_6003delAACinsTCT",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": true,
          "transcript": "ENST00000505625.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5242,
          "cdna_start": 2697,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001400441.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001387370.1",
          "strand": true,
          "transcript": "NM_001400441.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5399,
          "cdna_start": 2854,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 18,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001400442.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001387371.1",
          "strand": true,
          "transcript": "NM_001400442.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5238,
          "cdna_start": 2693,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 16,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001400443.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001387372.1",
          "strand": true,
          "transcript": "NM_001400443.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5522,
          "cdna_start": 2977,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001400444.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001387373.1",
          "strand": true,
          "transcript": "NM_001400444.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 6405,
          "cdna_start": 3860,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "NM_001400445.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001387374.1",
          "strand": true,
          "transcript": "NM_001400445.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5513,
          "cdna_start": 2974,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 19,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000394800.6",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000378279.2",
          "strand": true,
          "transcript": "ENST00000394800.6",
          "transcript_support_level": 5
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5028,
          "cdna_start": 2798,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000910014.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000580073.1",
          "strand": true,
          "transcript": "ENST00000910014.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4018,
          "cdna_start": 2709,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000910016.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000580075.1",
          "strand": true,
          "transcript": "ENST00000910016.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3998,
          "cdna_start": 2687,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000910028.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000580087.1",
          "strand": true,
          "transcript": "ENST00000910028.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4113,
          "cdna_start": 2690,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000928206.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598265.1",
          "strand": true,
          "transcript": "ENST00000928206.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 4046,
          "cdna_start": 2737,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000928207.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598266.1",
          "strand": true,
          "transcript": "ENST00000928207.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 895,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3324,
          "cdna_start": 2700,
          "cds_end": null,
          "cds_length": 2688,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000955717.1",
          "gene_hgnc_id": 6912,
          "gene_symbol": "MATR3",
          "hgvs_c": "c.2425_2427delAACinsTCT",
          "hgvs_p": "p.Asn809Ser",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000625776.1",
          "strand": true,
          "transcript": "ENST00000955717.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "S",
          "aa_end": null,
          "aa_length": 893,
          "aa_ref": "N",
          "aa_start": 809,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3989,
          "cdna_start": 2688,
          "cds_end": null,
          "cds_length": 2682,
          "cds_start": 2425,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": null,
          "exon_rank_end": null,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.