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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-140691743-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=140691743&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 4,
"criteria": [
"PM2",
"BP4_Strong"
],
"effects": [
"missense_variant"
],
"gene_symbol": "HARS2",
"hgnc_id": 4817,
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"inheritance_mode": "AR",
"pathogenic_score": 2,
"score": -2,
"transcript": "NM_001363535.2",
"verdict": "Likely_benign"
},
{
"benign_score": 4,
"criteria": [
"BP4_Strong"
],
"effects": [
"upstream_gene_variant"
],
"gene_symbol": "HARS1",
"hgnc_id": 4816,
"hgvs_c": "c.-439C>A",
"hgvs_p": null,
"inheritance_mode": "AR,AD",
"pathogenic_score": 0,
"score": -4,
"transcript": "ENST00000431330.7",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_score": -2,
"allele_count_reference_population": 8,
"alphamissense_prediction": null,
"alphamissense_score": 0.0828,
"alt": "T",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.46,
"chr": "5",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not provided",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.06661689281463623,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 506,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2468,
"cdna_start": 289,
"cds_end": null,
"cds_length": 1521,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "NM_012208.4",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000230771.9",
"protein_coding": true,
"protein_id": "NP_036340.1",
"strand": true,
"transcript": "NM_012208.4",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 506,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 2468,
"cdna_start": 289,
"cds_end": null,
"cds_length": 1521,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000230771.9",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_012208.4",
"protein_coding": true,
"protein_id": "ENSP00000230771.3",
"strand": true,
"transcript": "ENST00000230771.9",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1450,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 6,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000510104.5",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "n.95G>T",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000423530.1",
"strand": true,
"transcript": "ENST00000510104.5",
"transcript_support_level": 1
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 516,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2491,
"cdna_start": 282,
"cds_end": null,
"cds_length": 1551,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000926034.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000596093.1",
"strand": true,
"transcript": "ENST00000926034.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 512,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2486,
"cdna_start": 289,
"cds_end": null,
"cds_length": 1539,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "NM_001363535.2",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001350464.1",
"strand": true,
"transcript": "NM_001363535.2",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 512,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2363,
"cdna_start": 200,
"cds_end": null,
"cds_length": 1539,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 15,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000645065.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000493571.1",
"strand": true,
"transcript": "ENST00000645065.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 512,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2469,
"cdna_start": 286,
"cds_end": null,
"cds_length": 1539,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000646468.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000494965.1",
"strand": true,
"transcript": "ENST00000646468.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 506,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2292,
"cdna_start": 183,
"cds_end": null,
"cds_length": 1521,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000645749.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000494296.1",
"strand": true,
"transcript": "ENST00000645749.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 495,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2437,
"cdna_start": 288,
"cds_end": null,
"cds_length": 1488,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000926031.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000596090.1",
"strand": true,
"transcript": "ENST00000926031.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 481,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2393,
"cdna_start": 289,
"cds_end": null,
"cds_length": 1446,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "NM_001278731.2",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001265660.1",
"strand": true,
"transcript": "NM_001278731.2",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 481,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1562,
"cdna_start": 135,
"cds_end": null,
"cds_length": 1446,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000508522.5",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000423616.1",
"strand": true,
"transcript": "ENST00000508522.5",
"transcript_support_level": 2
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 473,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2346,
"cdna_start": 291,
"cds_end": null,
"cds_length": 1422,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 1,
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"feature": "ENST00000642752.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000493630.1",
"strand": true,
"transcript": "ENST00000642752.1",
"transcript_support_level": null
},
{
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"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2335,
"cdna_start": 286,
"cds_end": null,
"cds_length": 1392,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000926033.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000596092.1",
"strand": true,
"transcript": "ENST00000926033.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
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"aa_length": 448,
"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2295,
"cdna_start": 291,
"cds_end": null,
"cds_length": 1347,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 11,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000879977.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000550036.1",
"strand": true,
"transcript": "ENST00000879977.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 432,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2251,
"cdna_start": 292,
"cds_end": null,
"cds_length": 1299,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 11,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000879976.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000550035.1",
"strand": true,
"transcript": "ENST00000879976.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 407,
"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2142,
"cdna_start": 263,
"cds_end": null,
"cds_length": 1224,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000943806.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000613865.1",
"strand": true,
"transcript": "ENST00000943806.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
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"aa_length": 399,
"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2110,
"cdna_start": 289,
"cds_end": null,
"cds_length": 1200,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000503873.6",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000424516.2",
"strand": true,
"transcript": "ENST00000503873.6",
"transcript_support_level": 3
},
{
"aa_alt": "L",
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"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2051,
"cdna_start": 291,
"cds_end": null,
"cds_length": 1104,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 9,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000879978.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000550037.1",
"strand": true,
"transcript": "ENST00000879978.1",
"transcript_support_level": null
},
{
"aa_alt": "L",
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"aa_ref": "R",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1426,
"cdna_start": 130,
"cds_end": null,
"cds_length": 1005,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000448069.2",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000407105.2",
"strand": true,
"transcript": "ENST00000448069.2",
"transcript_support_level": 2
},
{
"aa_alt": "L",
"aa_end": null,
"aa_length": 179,
"aa_ref": "R",
"aa_start": 32,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 1488,
"cdna_start": 292,
"cds_end": null,
"cds_length": 540,
"cds_start": 95,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000926032.1",
"gene_hgnc_id": 4817,
"gene_symbol": "HARS2",
"hgvs_c": "c.95G>T",
"hgvs_p": "p.Arg32Leu",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000596091.1",
"strand": true,
"transcript": "ENST00000926032.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 362,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2346,
"cdna_start": null,
"cds_end": null,
"cds_length": 1089,
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