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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-148425617-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=148425617&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 9,
"criteria": [
"BP4_Strong",
"BP6",
"BS2"
],
"effects": [
"missense_variant"
],
"gene_symbol": "FBXO38",
"hgnc_id": 28844,
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"inheritance_mode": "AD",
"pathogenic_score": 0,
"score": -9,
"transcript": "NM_205836.3",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6,BS2",
"acmg_score": -9,
"allele_count_reference_population": 178,
"alphamissense_prediction": null,
"alphamissense_score": 0.0744,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.52,
"chr": "5",
"clinvar_classification": "Conflicting classifications of pathogenicity",
"clinvar_disease": "Distal hereditary motor neuropathy type 2,not provided,not specified",
"clinvar_review_status": "criteria provided, conflicting classifications",
"clinvar_submissions_summary": "US:2 LB:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.06460395455360413,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1188,
"aa_ref": "V",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4401,
"cdna_start": 1979,
"cds_end": null,
"cds_length": 3567,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "NM_205836.3",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000340253.10",
"protein_coding": true,
"protein_id": "NP_995308.1",
"strand": true,
"transcript": "NM_205836.3",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1188,
"aa_ref": "V",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4401,
"cdna_start": 1979,
"cds_end": null,
"cds_length": 3567,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000340253.10",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_205836.3",
"protein_coding": true,
"protein_id": "ENSP00000342023.6",
"strand": true,
"transcript": "ENST00000340253.10",
"transcript_support_level": 5
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1113,
"aa_ref": "V",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4132,
"cdna_start": 1935,
"cds_end": null,
"cds_length": 3342,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000394370.7",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000377895.3",
"strand": true,
"transcript": "ENST00000394370.7",
"transcript_support_level": 1
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 943,
"aa_ref": "V",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3585,
"cdna_start": 1899,
"cds_end": null,
"cds_length": 2832,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 20,
"exon_rank": 13,
"exon_rank_end": null,
"feature": "ENST00000513826.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000426410.1",
"strand": true,
"transcript": "ENST00000513826.1",
"transcript_support_level": 1
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1189,
"aa_ref": "V",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4410,
"cdna_start": 1979,
"cds_end": null,
"cds_length": 3570,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000851429.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000521488.1",
"strand": true,
"transcript": "ENST00000851429.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1169,
"aa_ref": "V",
"aa_start": 593,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4356,
"cdna_start": 1934,
"cds_end": null,
"cds_length": 3510,
"cds_start": 1777,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000851426.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1777G>A",
"hgvs_p": "p.Val593Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000521485.1",
"strand": true,
"transcript": "ENST00000851426.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1146,
"aa_ref": "V",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4290,
"cdna_start": 1994,
"cds_end": null,
"cds_length": 3441,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000851423.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000521483.1",
"strand": true,
"transcript": "ENST00000851423.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1142,
"aa_ref": "V",
"aa_start": 566,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3949,
"cdna_start": 1812,
"cds_end": null,
"cds_length": 3429,
"cds_start": 1696,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": 13,
"exon_rank_end": null,
"feature": "ENST00000949015.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1696G>A",
"hgvs_p": "p.Val566Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000619074.1",
"strand": true,
"transcript": "ENST00000949015.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1127,
"aa_ref": "V",
"aa_start": 593,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3940,
"cdna_start": 1919,
"cds_end": null,
"cds_length": 3384,
"cds_start": 1777,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000949014.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1777G>A",
"hgvs_p": "p.Val593Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000619073.1",
"strand": true,
"transcript": "ENST00000949014.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1123,
"aa_ref": "V",
"aa_start": 547,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3929,
"cdna_start": 1781,
"cds_end": null,
"cds_length": 3372,
"cds_start": 1639,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": 13,
"exon_rank_end": null,
"feature": "ENST00000949013.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1639G>A",
"hgvs_p": "p.Val547Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000619072.1",
"strand": true,
"transcript": "ENST00000949013.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1114,
"aa_ref": "V",
"aa_start": 612,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4157,
"cdna_start": 1958,
"cds_end": null,
"cds_length": 3345,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000851430.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000521489.1",
"strand": true,
"transcript": "ENST00000851430.1",
"transcript_support_level": null
},
{
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"aa_length": 1113,
"aa_ref": "V",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4176,
"cdna_start": 1979,
"cds_end": null,
"cds_length": 3342,
"cds_start": 1834,
"consequences": [
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],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "NM_030793.5",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_110420.3",
"strand": true,
"transcript": "NM_030793.5",
"transcript_support_level": null
},
{
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"aa_ref": "V",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4252,
"cdna_start": 2041,
"cds_end": null,
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"cds_start": 1834,
"consequences": [
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],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000851420.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000521480.1",
"strand": true,
"transcript": "ENST00000851420.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
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"aa_length": 1113,
"aa_ref": "V",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4185,
"cdna_start": 1975,
"cds_end": null,
"cds_length": 3342,
"cds_start": 1834,
"consequences": [
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],
"exon_count": 22,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000949010.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000619069.1",
"strand": true,
"transcript": "ENST00000949010.1",
"transcript_support_level": null
},
{
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"aa_ref": "V",
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"biotype": "protein_coding",
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"cdna_end": null,
"cdna_length": 3920,
"cdna_start": 1998,
"cds_end": null,
"cds_length": 3342,
"cds_start": 1834,
"consequences": [
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],
"exon_count": 23,
"exon_rank": 15,
"exon_rank_end": null,
"feature": "ENST00000949016.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000619075.1",
"strand": true,
"transcript": "ENST00000949016.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1078,
"aa_ref": "V",
"aa_start": 502,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3714,
"cdna_start": 1567,
"cds_end": null,
"cds_length": 3237,
"cds_start": 1504,
"consequences": [
"missense_variant"
],
"exon_count": 19,
"exon_rank": 11,
"exon_rank_end": null,
"feature": "ENST00000928055.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1504G>A",
"hgvs_p": "p.Val502Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000598114.1",
"strand": true,
"transcript": "ENST00000928055.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 1003,
"aa_ref": "V",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3580,
"cdna_start": 1660,
"cds_end": null,
"cds_length": 3012,
"cds_start": 1504,
"consequences": [
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],
"exon_count": 20,
"exon_rank": 12,
"exon_rank_end": null,
"feature": "ENST00000949012.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1504G>A",
"hgvs_p": "p.Val502Ile",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000619071.1",
"strand": true,
"transcript": "ENST00000949012.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
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"aa_ref": "V",
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"biotype": "protein_coding",
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"cdna_length": 3666,
"cdna_start": 1979,
"cds_end": null,
"cds_length": 2832,
"cds_start": 1834,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "NM_001271723.2",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001258652.1",
"strand": true,
"transcript": "NM_001271723.2",
"transcript_support_level": null
},
{
"aa_alt": "I",
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"aa_ref": "V",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3680,
"cdna_start": 2002,
"cds_end": null,
"cds_length": 2832,
"cds_start": 1834,
"consequences": [
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],
"exon_count": 21,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000296701.10",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1834G>A",
"hgvs_p": "p.Val612Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000296701.6",
"strand": true,
"transcript": "ENST00000296701.10",
"transcript_support_level": 2
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 924,
"aa_ref": "V",
"aa_start": 593,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3384,
"cdna_start": 1924,
"cds_end": null,
"cds_length": 2775,
"cds_start": 1777,
"consequences": [
"missense_variant"
],
"exon_count": 21,
"exon_rank": 14,
"exon_rank_end": null,
"feature": "ENST00000949011.1",
"gene_hgnc_id": 28844,
"gene_symbol": "FBXO38",
"hgvs_c": "c.1777G>A",
"hgvs_p": "p.Val593Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000619070.1",
"strand": true,
"transcript": "ENST00000949011.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 814,
"aa_ref": "V",
"aa_start": 483,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2955,
"cdna_start": 1543,
"cds_end": null,
"cds_length": 2445,
"cds_start": 1447,
"consequences": [
"missense_variant"
],
"exon_count": 19,
"exon_rank": 12,
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