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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-150121305-G-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=150121305&ref=G&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 5,
          "criteria": [
            "PM2",
            "BP4_Strong",
            "BP7"
          ],
          "effects": [
            "synonymous_variant"
          ],
          "gene_symbol": "PDGFRB",
          "hgnc_id": 8804,
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "inheritance_mode": "AD",
          "pathogenic_score": 2,
          "score": -3,
          "transcript": "NM_002609.4",
          "verdict": "Likely_benign"
        }
      ],
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PM2,BP4_Strong,BP7",
      "acmg_score": -3,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": null,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.79,
      "chr": "5",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": -0.7900000214576721,
      "computational_source_selected": "BayesDel_noAF",
      "consequences": [
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5700,
          "cdna_start": 2817,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "NM_002609.4",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000261799.9",
          "protein_coding": true,
          "protein_id": "NP_002600.1",
          "strand": false,
          "transcript": "NM_002609.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 5700,
          "cdna_start": 2817,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000261799.9",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_002609.4",
          "protein_coding": true,
          "protein_id": "ENSP00000261799.4",
          "strand": false,
          "transcript": "ENST00000261799.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3860,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000520579.5",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "n.*1676C>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000430026.1",
          "strand": false,
          "transcript": "ENST00000520579.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3860,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000520579.5",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "n.*1676C>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000430026.1",
          "strand": false,
          "transcript": "ENST00000520579.5",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1140,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5961,
          "cdna_start": 2976,
          "cds_end": null,
          "cds_length": 3423,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 24,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000890716.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560775.1",
          "strand": false,
          "transcript": "ENST00000890716.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1133,
          "aa_ref": "R",
          "aa_start": 815,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5766,
          "cdna_start": 2891,
          "cds_end": null,
          "cds_length": 3402,
          "cds_start": 2443,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000890721.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2443C>A",
          "hgvs_p": "p.Arg815Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560780.1",
          "strand": false,
          "transcript": "ENST00000890721.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1125,
          "aa_ref": "R",
          "aa_start": 807,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5661,
          "cdna_start": 2781,
          "cds_end": null,
          "cds_length": 3378,
          "cds_start": 2419,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 22,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000890727.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2419C>A",
          "hgvs_p": "p.Arg807Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560786.1",
          "strand": false,
          "transcript": "ENST00000890727.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5496,
          "cdna_start": 2613,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 24,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000890715.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560774.1",
          "strand": false,
          "transcript": "ENST00000890715.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5850,
          "cdna_start": 2969,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 24,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000890717.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560776.1",
          "strand": false,
          "transcript": "ENST00000890717.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5872,
          "cdna_start": 2991,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 24,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000890718.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560777.1",
          "strand": false,
          "transcript": "ENST00000890718.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5394,
          "cdna_start": 2517,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000890723.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560782.1",
          "strand": false,
          "transcript": "ENST00000890723.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5381,
          "cdna_start": 2500,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000890724.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560783.1",
          "strand": false,
          "transcript": "ENST00000890724.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5383,
          "cdna_start": 2500,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000890725.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560784.1",
          "strand": false,
          "transcript": "ENST00000890725.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5619,
          "cdna_start": 2736,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 22,
          "exon_rank": 16,
          "exon_rank_end": null,
          "feature": "ENST00000890726.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560785.1",
          "strand": false,
          "transcript": "ENST00000890726.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5303,
          "cdna_start": 2420,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000951660.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000621719.1",
          "strand": false,
          "transcript": "ENST00000951660.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1106,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5527,
          "cdna_start": 2651,
          "cds_end": null,
          "cds_length": 3321,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000951664.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2362C>A",
          "hgvs_p": "p.Arg788Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000621723.1",
          "strand": false,
          "transcript": "ENST00000951664.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1105,
          "aa_ref": "R",
          "aa_start": 787,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5688,
          "cdna_start": 2807,
          "cds_end": null,
          "cds_length": 3318,
          "cds_start": 2359,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000890720.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2359C>A",
          "hgvs_p": "p.Arg787Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000560779.1",
          "strand": false,
          "transcript": "ENST00000890720.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1105,
          "aa_ref": "R",
          "aa_start": 787,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5668,
          "cdna_start": 2794,
          "cds_end": null,
          "cds_length": 3318,
          "cds_start": 2359,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 24,
          "exon_rank": 18,
          "exon_rank_end": null,
          "feature": "ENST00000951663.1",
          "gene_hgnc_id": 8804,
          "gene_symbol": "PDGFRB",
          "hgvs_c": "c.2359C>A",
          "hgvs_p": "p.Arg787Arg",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000621722.1",
          "strand": false,
          "transcript": "ENST00000951663.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "R",
          "aa_end": null,
          "aa_length": 1100,
          "aa_ref": "R",
          "aa_start": 788,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 5641,
          "cdna_start": 2779,
          "cds_end": null,
          "cds_length": 3303,
          "cds_start": 2362,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_count": 23,
          "exon_rank": 17,
          "exon_rank_end": null,
          "feature": "ENST00000951661.1",
          "gene_hgnc_id": 8804,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.