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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-150256811-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=150256811&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 150256811,
"ref": "A",
"alt": "G",
"effect": "missense_variant",
"transcript": "ENST00000671881.1",
"consequences": [
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "NM_015981.4",
"protein_id": "NP_057065.2",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 489,
"cds_start": 293,
"cds_end": null,
"cds_length": 1470,
"cdna_start": 441,
"cdna_end": null,
"cdna_length": 4837,
"mane_select": "ENST00000671881.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000671881.1",
"protein_id": "ENSP00000500386.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 489,
"cds_start": 293,
"cds_end": null,
"cds_length": 1470,
"cdna_start": 441,
"cdna_end": null,
"cdna_length": 4837,
"mane_select": "NM_015981.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000348628.11",
"protein_id": "ENSP00000261793.8",
"transcript_support_level": 1,
"aa_start": 98,
"aa_end": null,
"aa_length": 478,
"cds_start": 293,
"cds_end": null,
"cds_length": 1437,
"cdna_start": 460,
"cdna_end": null,
"cdna_length": 4823,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000398376.8",
"protein_id": "ENSP00000381412.4",
"transcript_support_level": 1,
"aa_start": 98,
"aa_end": null,
"aa_length": 421,
"cds_start": 293,
"cds_end": null,
"cds_length": 1266,
"cdna_start": 406,
"cdna_end": null,
"cdna_length": 1425,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.381T>C",
"hgvs_p": null,
"transcript": "ENST00000508662.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1565,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000672396.1",
"protein_id": "ENSP00000499987.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 559,
"cds_start": 293,
"cds_end": null,
"cds_length": 1680,
"cdna_start": 423,
"cdna_end": null,
"cdna_length": 2424,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000510347.2",
"protein_id": "ENSP00000426607.2",
"transcript_support_level": 4,
"aa_start": 98,
"aa_end": null,
"aa_length": 548,
"cds_start": 293,
"cds_end": null,
"cds_length": 1647,
"cdna_start": 441,
"cdna_end": null,
"cdna_length": 2324,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "NM_001363989.1",
"protein_id": "NP_001350918.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 489,
"cds_start": 293,
"cds_end": null,
"cds_length": 1470,
"cdna_start": 627,
"cdna_end": null,
"cdna_length": 5023,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000672829.1",
"protein_id": "ENSP00000500613.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 489,
"cds_start": 293,
"cds_end": null,
"cds_length": 1470,
"cdna_start": 457,
"cdna_end": null,
"cdna_length": 2588,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000682786.1",
"protein_id": "ENSP00000507199.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 489,
"cds_start": 293,
"cds_end": null,
"cds_length": 1470,
"cdna_start": 448,
"cdna_end": null,
"cdna_length": 3142,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "NM_001363990.1",
"protein_id": "NP_001350919.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 478,
"cds_start": 293,
"cds_end": null,
"cds_length": 1437,
"cdna_start": 627,
"cdna_end": null,
"cdna_length": 4990,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "NM_001369025.2",
"protein_id": "NP_001355954.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 478,
"cds_start": 293,
"cds_end": null,
"cds_length": 1437,
"cdna_start": 441,
"cdna_end": null,
"cdna_length": 4833,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "NM_171825.3",
"protein_id": "NP_741960.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 478,
"cds_start": 293,
"cds_end": null,
"cds_length": 1437,
"cdna_start": 441,
"cdna_end": null,
"cdna_length": 4804,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000672479.1",
"protein_id": "ENSP00000500642.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 478,
"cds_start": 293,
"cds_end": null,
"cds_length": 1437,
"cdna_start": 590,
"cdna_end": null,
"cdna_length": 4848,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000672752.1",
"protein_id": "ENSP00000499939.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 478,
"cds_start": 293,
"cds_end": null,
"cds_length": 1437,
"cdna_start": 441,
"cdna_end": null,
"cdna_length": 3131,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser",
"transcript": "ENST00000672785.1",
"protein_id": "ENSP00000500496.1",
"transcript_support_level": null,
"aa_start": 98,
"aa_end": null,
"aa_length": 467,
"cds_start": 293,
"cds_end": null,
"cds_length": 1404,
"cdna_start": 423,
"cdna_end": null,
"cdna_length": 2454,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "F",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "c.233T>C",
"hgvs_p": "p.Phe78Ser",
"transcript": "ENST00000683332.1",
"protein_id": "ENSP00000507006.1",
"transcript_support_level": null,
"aa_start": 78,
"aa_end": null,
"aa_length": 458,
"cds_start": 233,
"cds_end": null,
"cds_length": 1377,
"cdna_start": 233,
"cdna_end": null,
"cdna_length": 4193,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.457T>C",
"hgvs_p": null,
"transcript": "ENST00000515758.2",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1208,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.293T>C",
"hgvs_p": null,
"transcript": "ENST00000672089.1",
"protein_id": "ENSP00000500700.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.457T>C",
"hgvs_p": null,
"transcript": "ENST00000672404.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
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"cdna_length": 1448,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.457T>C",
"hgvs_p": null,
"transcript": "ENST00000683115.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1787,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.293T>C",
"hgvs_p": null,
"transcript": "ENST00000683506.1",
"protein_id": "ENSP00000508302.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2483,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.451T>C",
"hgvs_p": null,
"transcript": "ENST00000684093.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4411,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"hgvs_c": "n.393T>C",
"hgvs_p": null,
"transcript": "ENST00000684465.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4353,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CAMK2A",
"gene_hgnc_id": 1460,
"dbsnp": "rs1554122526",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9377648830413818,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.71,
"revel_prediction": "Pathogenic",
"alphamissense_score": 0.9994,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.22,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 6.278,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 5,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,PP3_Moderate,PP5",
"acmg_by_gene": [
{
"score": 5,
"benign_score": 0,
"pathogenic_score": 5,
"criteria": [
"PM2",
"PP3_Moderate",
"PP5"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000671881.1",
"gene_symbol": "CAMK2A",
"hgnc_id": 1460,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.293T>C",
"hgvs_p": "p.Phe98Ser"
}
],
"clinvar_disease": " autosomal dominant 53,Intellectual disability",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "Intellectual disability, autosomal dominant 53|Intellectual disability",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}