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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-150398368-GAA-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=150398368&ref=GAA&alt=G&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 0,
"criteria": [
"PVS1",
"PM2",
"PP5_Moderate"
],
"effects": [
"frameshift_variant"
],
"gene_symbol": "TCOF1",
"hgnc_id": 11654,
"hgvs_c": "c.4367_4368delAA",
"hgvs_p": "p.Lys1456fs",
"inheritance_mode": "AD",
"pathogenic_score": 12,
"score": 12,
"transcript": "NM_001371623.1",
"verdict": "Pathogenic"
}
],
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5_Moderate",
"acmg_score": 12,
"allele_count_reference_population": 0,
"alphamissense_prediction": null,
"alphamissense_score": null,
"alt": "G",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": null,
"bayesdelnoaf_score": null,
"chr": "5",
"clinvar_classification": "Pathogenic",
"clinvar_disease": "not provided",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "P:1",
"computational_prediction_selected": null,
"computational_score_selected": null,
"computational_source_selected": null,
"consequences": [
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1489,
"aa_ref": "K",
"aa_start": 1456,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5026,
"cdna_start": 4417,
"cds_end": null,
"cds_length": 4470,
"cds_start": 4367,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "NM_001371623.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4367_4368delAA",
"hgvs_p": "p.Lys1456fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000643257.2",
"protein_coding": true,
"protein_id": "NP_001358552.1",
"strand": true,
"transcript": "NM_001371623.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1489,
"aa_ref": "K",
"aa_start": 1456,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 5026,
"cdna_start": 4417,
"cds_end": null,
"cds_length": 4470,
"cds_start": 4367,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000643257.2",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4367_4368delAA",
"hgvs_p": "p.Lys1456fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001371623.1",
"protein_coding": true,
"protein_id": "ENSP00000493815.1",
"strand": true,
"transcript": "ENST00000643257.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1488,
"aa_ref": "K",
"aa_start": 1455,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4467,
"cdna_start": 4364,
"cds_end": null,
"cds_length": 4467,
"cds_start": 4364,
"consequences": [
"frameshift_variant"
],
"exon_count": 26,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000504761.6",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4364_4365delAA",
"hgvs_p": "p.Lys1455fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000421655.2",
"strand": true,
"transcript": "ENST00000504761.6",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1411,
"aa_ref": "K",
"aa_start": 1378,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4832,
"cdna_start": 4208,
"cds_end": null,
"cds_length": 4236,
"cds_start": 4133,
"consequences": [
"frameshift_variant"
],
"exon_count": 26,
"exon_rank": 24,
"exon_rank_end": null,
"feature": "ENST00000323668.11",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4133_4134delAA",
"hgvs_p": "p.Lys1378fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000325223.6",
"strand": true,
"transcript": "ENST00000323668.11",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1558,
"aa_ref": "K",
"aa_start": 1525,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5217,
"cdna_start": 4608,
"cds_end": null,
"cds_length": 4677,
"cds_start": 4574,
"consequences": [
"frameshift_variant"
],
"exon_count": 29,
"exon_rank": 27,
"exon_rank_end": null,
"feature": "ENST00000930571.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4574_4575delAA",
"hgvs_p": "p.Lys1525fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600630.1",
"strand": true,
"transcript": "ENST00000930571.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1525,
"aa_ref": "K",
"aa_start": 1492,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5135,
"cdna_start": 4525,
"cds_end": null,
"cds_length": 4578,
"cds_start": 4475,
"consequences": [
"frameshift_variant"
],
"exon_count": 28,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000930555.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4475_4476delAA",
"hgvs_p": "p.Lys1492fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600614.1",
"strand": true,
"transcript": "ENST00000930555.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1525,
"aa_ref": "K",
"aa_start": 1492,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5133,
"cdna_start": 4525,
"cds_end": null,
"cds_length": 4578,
"cds_start": 4475,
"consequences": [
"frameshift_variant"
],
"exon_count": 28,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000930560.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4475_4476delAA",
"hgvs_p": "p.Lys1492fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600619.1",
"strand": true,
"transcript": "ENST00000930560.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1524,
"aa_ref": "K",
"aa_start": 1491,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5133,
"cdna_start": 4521,
"cds_end": null,
"cds_length": 4575,
"cds_start": 4472,
"consequences": [
"frameshift_variant"
],
"exon_count": 28,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000930554.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4472_4473delAA",
"hgvs_p": "p.Lys1491fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600613.1",
"strand": true,
"transcript": "ENST00000930554.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1514,
"aa_ref": "K",
"aa_start": 1481,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5094,
"cdna_start": 4479,
"cds_end": null,
"cds_length": 4545,
"cds_start": 4442,
"consequences": [
"frameshift_variant"
],
"exon_count": 28,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000930565.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4442_4443delAA",
"hgvs_p": "p.Lys1481fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600624.1",
"strand": true,
"transcript": "ENST00000930565.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1509,
"aa_ref": "K",
"aa_start": 1476,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5071,
"cdna_start": 4450,
"cds_end": null,
"cds_length": 4530,
"cds_start": 4427,
"consequences": [
"frameshift_variant"
],
"exon_count": 28,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000930570.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4427_4428delAA",
"hgvs_p": "p.Lys1476fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600629.1",
"strand": true,
"transcript": "ENST00000930570.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1508,
"aa_ref": "K",
"aa_start": 1475,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5027,
"cdna_start": 4427,
"cds_end": null,
"cds_length": 4527,
"cds_start": 4424,
"consequences": [
"frameshift_variant"
],
"exon_count": 28,
"exon_rank": 26,
"exon_rank_end": null,
"feature": "ENST00000930586.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4424_4425delAA",
"hgvs_p": "p.Lys1475fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600645.1",
"strand": true,
"transcript": "ENST00000930586.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1488,
"aa_ref": "K",
"aa_start": 1455,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5023,
"cdna_start": 4414,
"cds_end": null,
"cds_length": 4467,
"cds_start": 4364,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "NM_001135243.2",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4364_4365delAA",
"hgvs_p": "p.Lys1455fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001128715.1",
"strand": true,
"transcript": "NM_001135243.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1488,
"aa_ref": "K",
"aa_start": 1455,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5095,
"cdna_start": 4472,
"cds_end": null,
"cds_length": 4467,
"cds_start": 4364,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000377797.7",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4364_4365delAA",
"hgvs_p": "p.Lys1455fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000367028.4",
"strand": true,
"transcript": "ENST00000377797.7",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1488,
"aa_ref": "K",
"aa_start": 1455,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4646,
"cdna_start": 4364,
"cds_end": null,
"cds_length": 4467,
"cds_start": 4364,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000513346.5",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4364_4365delAA",
"hgvs_p": "p.Lys1455fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000427484.1",
"strand": true,
"transcript": "ENST00000513346.5",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1488,
"aa_ref": "K",
"aa_start": 1456,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5023,
"cdna_start": 4410,
"cds_end": null,
"cds_length": 4467,
"cds_start": 4367,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000930558.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4367_4368delAA",
"hgvs_p": "p.Lys1456fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600617.1",
"strand": true,
"transcript": "ENST00000930558.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1487,
"aa_ref": "K",
"aa_start": 1454,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5037,
"cdna_start": 4404,
"cds_end": null,
"cds_length": 4464,
"cds_start": 4361,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000930544.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4361_4362delAA",
"hgvs_p": "p.Lys1454fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600603.1",
"strand": true,
"transcript": "ENST00000930544.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1487,
"aa_ref": "K",
"aa_start": 1454,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5021,
"cdna_start": 4407,
"cds_end": null,
"cds_length": 4464,
"cds_start": 4361,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000930556.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4361_4362delAA",
"hgvs_p": "p.Lys1454fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600615.1",
"strand": true,
"transcript": "ENST00000930556.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1487,
"aa_ref": "K",
"aa_start": 1456,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 5021,
"cdna_start": 4403,
"cds_end": null,
"cds_length": 4464,
"cds_start": 4367,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000930557.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4367_4368delAA",
"hgvs_p": "p.Lys1456fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600616.1",
"strand": true,
"transcript": "ENST00000930557.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1487,
"aa_ref": "K",
"aa_start": 1455,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4997,
"cdna_start": 4396,
"cds_end": null,
"cds_length": 4464,
"cds_start": 4364,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000930575.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4364_4365delAA",
"hgvs_p": "p.Lys1455fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600634.1",
"strand": true,
"transcript": "ENST00000930575.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1472,
"aa_ref": "K",
"aa_start": 1439,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4951,
"cdna_start": 4339,
"cds_end": null,
"cds_length": 4419,
"cds_start": 4316,
"consequences": [
"frameshift_variant"
],
"exon_count": 27,
"exon_rank": 25,
"exon_rank_end": null,
"feature": "ENST00000930576.1",
"gene_hgnc_id": 11654,
"gene_symbol": "TCOF1",
"hgvs_c": "c.4316_4317delAA",
"hgvs_p": "p.Lys1439fs",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000600635.1",
"strand": true,
"transcript": "ENST00000930576.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 1470,
"aa_ref": "K",
"aa_start": 1438,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4967,
"cdna_start": 4363,
"cds_end": null,
"cds_length": 4413,
"cds_start": 4313,
"consequences": [
"frameshift_variant"
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