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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-153790814-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=153790814&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 153790814,
"ref": "G",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000285900.10",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2271-3807G>T",
"hgvs_p": null,
"transcript": "NM_000827.4",
"protein_id": "NP_000818.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 906,
"cds_start": -4,
"cds_end": null,
"cds_length": 2721,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5584,
"mane_select": "ENST00000285900.10",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2271-3807G>T",
"hgvs_p": null,
"transcript": "ENST00000285900.10",
"protein_id": "ENSP00000285900.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 906,
"cds_start": -4,
"cds_end": null,
"cds_length": 2721,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5584,
"mane_select": "NM_000827.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2271-4662G>T",
"hgvs_p": null,
"transcript": "ENST00000340592.10",
"protein_id": "ENSP00000339343.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 906,
"cds_start": -4,
"cds_end": null,
"cds_length": 2721,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5584,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2271-3807G>T",
"hgvs_p": null,
"transcript": "ENST00000706733.1",
"protein_id": "ENSP00000516520.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 947,
"cds_start": -4,
"cds_end": null,
"cds_length": 2844,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5736,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2301-3807G>T",
"hgvs_p": null,
"transcript": "NM_001258021.2",
"protein_id": "NP_001244950.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 916,
"cds_start": -4,
"cds_end": null,
"cds_length": 2751,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5422,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2301-4662G>T",
"hgvs_p": null,
"transcript": "NM_001258022.2",
"protein_id": "NP_001244951.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 916,
"cds_start": -4,
"cds_end": null,
"cds_length": 2751,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5422,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2301-4662G>T",
"hgvs_p": null,
"transcript": "ENST00000448073.8",
"protein_id": "ENSP00000415569.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 916,
"cds_start": -4,
"cds_end": null,
"cds_length": 2751,
"cdna_start": null,
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"cdna_length": 2825,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2301-3807G>T",
"hgvs_p": null,
"transcript": "ENST00000518783.1",
"protein_id": "ENSP00000428994.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 916,
"cds_start": -4,
"cds_end": null,
"cds_length": 2751,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5233,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 14,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2298-4662G>T",
"hgvs_p": null,
"transcript": "NM_001364166.2",
"protein_id": "NP_001351095.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 915,
"cds_start": -4,
"cds_end": null,
"cds_length": 2748,
"cdna_start": null,
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"cdna_length": 6031,
"mane_select": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 17,
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"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2298-4662G>T",
"hgvs_p": null,
"transcript": "ENST00000706734.1",
"protein_id": "ENSP00000516521.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2271-4662G>T",
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"transcript": "NM_001114183.2",
"protein_id": "NP_001107655.1",
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},
{
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],
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"gene_symbol": "GRIA1",
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"transcript": "NM_001364165.2",
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},
{
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],
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"gene_symbol": "GRIA1",
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"transcript": "NM_001258023.1",
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},
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],
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"gene_symbol": "GRIA1",
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},
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],
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"gene_symbol": "GRIA1",
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"transcript": "ENST00000521843.6",
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},
{
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],
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"gene_symbol": "GRIA1",
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],
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"gene_symbol": "GRIA1",
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"hgvs_c": "c.2031-3807G>T",
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"transcript": "ENST00000518142.5",
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},
{
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],
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"intron_rank": 14,
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"gene_symbol": "GRIA1",
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"hgvs_c": "c.1986-4662G>T",
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"transcript": "NM_001258020.2",
"protein_id": "NP_001244949.1",
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},
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],
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"gene_symbol": "GRIA1",
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],
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},
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],
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"gene_symbol": "GRIA1",
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"transcript": "XM_047417128.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 13,
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"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"hgvs_c": "c.2301-3807G>T",
"hgvs_p": null,
"transcript": "XM_017009392.2",
"protein_id": "XP_016864881.1",
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"feature": null
}
],
"gene_symbol": "GRIA1",
"gene_hgnc_id": 4571,
"dbsnp": "rs4958351",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.9200000166893005,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.92,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.007,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000285900.10",
"gene_symbol": "GRIA1",
"hgnc_id": 4571,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR,AD,Unknown",
"hgvs_c": "c.2271-3807G>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}