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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-157828475-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=157828475&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 157828475,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "NM_001195555.2",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "NM_014666.4",
"protein_id": "NP_055481.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 625,
"cds_start": null,
"cds_end": null,
"cds_length": 1878,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000411809.7",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_014666.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000411809.7",
"protein_id": "ENSP00000388340.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 625,
"cds_start": null,
"cds_end": null,
"cds_length": 1878,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_014666.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000411809.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000523908.5",
"protein_id": "ENSP00000429824.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 643,
"cds_start": null,
"cds_end": null,
"cds_length": 1932,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000523908.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000904378.1",
"protein_id": "ENSP00000574437.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 653,
"cds_start": null,
"cds_end": null,
"cds_length": 1962,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904378.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000930860.1",
"protein_id": "ENSP00000600919.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 653,
"cds_start": null,
"cds_end": null,
"cds_length": 1962,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930860.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000904382.1",
"protein_id": "ENSP00000574441.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 649,
"cds_start": null,
"cds_end": null,
"cds_length": 1950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904382.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "NM_001195555.2",
"protein_id": "NP_001182484.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 643,
"cds_start": null,
"cds_end": null,
"cds_length": 1932,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001195555.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000930851.1",
"protein_id": "ENSP00000600910.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 642,
"cds_start": null,
"cds_end": null,
"cds_length": 1929,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930851.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000930854.1",
"protein_id": "ENSP00000600913.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 642,
"cds_start": null,
"cds_end": null,
"cds_length": 1929,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930854.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000904377.1",
"protein_id": "ENSP00000574436.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 641,
"cds_start": null,
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"cds_length": 1926,
"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000904377.1"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 12,
"intron_rank": 1,
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"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000904380.1",
"protein_id": "ENSP00000574439.1",
"transcript_support_level": null,
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"cds_start": null,
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"cdna_start": null,
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},
{
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"consequences": [
"intron_variant"
],
"exon_rank": null,
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"gene_symbol": "CLINT1",
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"hgvs_c": "c.42-10928C>T",
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"transcript": "ENST00000904383.1",
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"cdna_start": null,
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"feature": "ENST00000904383.1"
},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 13,
"intron_rank": 1,
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"gene_symbol": "CLINT1",
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},
{
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],
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"gene_symbol": "CLINT1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "CLINT1",
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"hgvs_c": "c.42-10928C>T",
"hgvs_p": null,
"transcript": "ENST00000930858.1",
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},
{
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],
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"gene_symbol": "CLINT1",
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"hgvs_c": "c.-13-10928C>T",
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"transcript": "NM_001195556.2",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "CLINT1",
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"hgvs_c": "c.-13-10928C>T",
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"transcript": "ENST00000523094.5",
"protein_id": "ENSP00000429345.1",
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"biotype": "protein_coding",
"feature": "ENST00000523094.5"
},
{
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"strand": false,
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],
"exon_rank": null,
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"exon_count": 12,
"intron_rank": 1,
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"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.-13-10928C>T",
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"transcript": "ENST00000530742.5",
"protein_id": "ENSP00000433419.1",
"transcript_support_level": 5,
"aa_start": null,
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},
{
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],
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"gene_symbol": "CLINT1",
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},
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],
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},
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],
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"feature": "ENST00000960220.1"
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 12,
"intron_rank": 1,
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"gene_symbol": "CLINT1",
"gene_hgnc_id": 23186,
"hgvs_c": "c.42-10928C>T",
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"transcript": "ENST00000960221.1",
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"transcript_support_level": null,
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"biotype": "protein_coding",
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},
{
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"consequences": [
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],
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