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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-16463491-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=16463491&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 16463491,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_033414.3",
"consequences": [
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu",
"transcript": "NM_033414.3",
"protein_id": "NP_219482.1",
"transcript_support_level": null,
"aa_start": 293,
"aa_end": null,
"aa_length": 477,
"cds_start": 877,
"cds_end": null,
"cds_length": 1434,
"cdna_start": 1012,
"cdna_end": null,
"cdna_length": 1707,
"mane_select": "ENST00000308683.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_033414.3"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu",
"transcript": "ENST00000308683.3",
"protein_id": "ENSP00000310042.2",
"transcript_support_level": 1,
"aa_start": 293,
"aa_end": null,
"aa_length": 477,
"cds_start": 877,
"cds_end": null,
"cds_length": 1434,
"cdna_start": 1012,
"cdna_end": null,
"cdna_length": 1707,
"mane_select": "NM_033414.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000308683.3"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu",
"transcript": "ENST00000933612.1",
"protein_id": "ENSP00000603671.1",
"transcript_support_level": null,
"aa_start": 293,
"aa_end": null,
"aa_length": 476,
"cds_start": 877,
"cds_end": null,
"cds_length": 1431,
"cdna_start": 1023,
"cdna_end": null,
"cdna_length": 1715,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933612.1"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu",
"transcript": "ENST00000933614.1",
"protein_id": "ENSP00000603673.1",
"transcript_support_level": null,
"aa_start": 293,
"aa_end": null,
"aa_length": 476,
"cds_start": 877,
"cds_end": null,
"cds_length": 1431,
"cdna_start": 1012,
"cdna_end": null,
"cdna_length": 1704,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933614.1"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu",
"transcript": "ENST00000933615.1",
"protein_id": "ENSP00000603674.1",
"transcript_support_level": null,
"aa_start": 293,
"aa_end": null,
"aa_length": 476,
"cds_start": 877,
"cds_end": null,
"cds_length": 1431,
"cdna_start": 1012,
"cdna_end": null,
"cdna_length": 1704,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933615.1"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu",
"transcript": "ENST00000933613.1",
"protein_id": "ENSP00000603672.1",
"transcript_support_level": null,
"aa_start": 293,
"aa_end": null,
"aa_length": 475,
"cds_start": 877,
"cds_end": null,
"cds_length": 1428,
"cdna_start": 1015,
"cdna_end": null,
"cdna_length": 1705,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933613.1"
},
{
"aa_ref": "K",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu",
"transcript": "ENST00000933616.1",
"protein_id": "ENSP00000603675.1",
"transcript_support_level": null,
"aa_start": 293,
"aa_end": null,
"aa_length": 429,
"cds_start": 877,
"cds_end": null,
"cds_length": 1290,
"cdna_start": 1009,
"cdna_end": null,
"cdna_length": 1560,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933616.1"
}
],
"gene_symbol": "ZNF622",
"gene_hgnc_id": 30958,
"dbsnp": "rs1488713506",
"frequency_reference_population": 0.0000027395758,
"hom_count_reference_population": 0,
"allele_count_reference_population": 4,
"gnomad_exomes_af": 0.00000273958,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 4,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.05737578868865967,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.045,
"revel_prediction": "Benign",
"alphamissense_score": 0.1171,
"alphamissense_prediction": "Benign",
"bayesdelnoaf_score": -0.47,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.591,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -2,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong",
"acmg_by_gene": [
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NM_033414.3",
"gene_symbol": "ZNF622",
"hgnc_id": 30958,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.877A>G",
"hgvs_p": "p.Lys293Glu"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}