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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-16483376-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=16483376&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 1,
          "criteria": [
            "PM2",
            "BP4"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "RETREG1",
          "hgnc_id": 25964,
          "hgvs_c": "c.555G>A",
          "hgvs_p": "p.Met185Ile",
          "inheritance_mode": "AR",
          "pathogenic_score": 2,
          "score": 1,
          "transcript": "NM_001034850.3",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4",
      "acmg_score": 1,
      "allele_count_reference_population": 37,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.7966,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.4,
      "chr": "5",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "Inborn genetic diseases,not provided",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "US:2",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.27707332372665405,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 497,
          "aa_ref": "M",
          "aa_start": 185,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3208,
          "cdna_start": 581,
          "cds_end": null,
          "cds_length": 1494,
          "cds_start": 555,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001034850.3",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.555G>A",
          "hgvs_p": "p.Met185Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000306320.10",
          "protein_coding": true,
          "protein_id": "NP_001030022.1",
          "strand": false,
          "transcript": "NM_001034850.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 497,
          "aa_ref": "M",
          "aa_start": 185,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 3208,
          "cdna_start": 581,
          "cds_end": null,
          "cds_length": 1494,
          "cds_start": 555,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000306320.10",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.555G>A",
          "hgvs_p": "p.Met185Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001034850.3",
          "protein_coding": true,
          "protein_id": "ENSP00000304642.9",
          "strand": false,
          "transcript": "ENST00000306320.10",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 356,
          "aa_ref": "M",
          "aa_start": 44,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3145,
          "cdna_start": 518,
          "cds_end": null,
          "cds_length": 1071,
          "cds_start": 132,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000399793.6",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.132G>A",
          "hgvs_p": "p.Met44Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000382691.2",
          "strand": false,
          "transcript": "ENST00000399793.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "nonsense_mediated_decay",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1531,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 8,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000510362.6",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "n.30G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": "ENSP00000425089.2",
          "strand": false,
          "transcript": "ENST00000510362.6",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 549,
          "aa_ref": "M",
          "aa_start": 237,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3346,
          "cdna_start": 737,
          "cds_end": null,
          "cds_length": 1650,
          "cds_start": 711,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000682229.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.711G>A",
          "hgvs_p": "p.Met237Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000507342.1",
          "strand": false,
          "transcript": "ENST00000682229.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 496,
          "aa_ref": "M",
          "aa_start": 185,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3184,
          "cdna_start": 578,
          "cds_end": null,
          "cds_length": 1491,
          "cds_start": 555,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 9,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000682564.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.555G>A",
          "hgvs_p": "p.Met185Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000508099.1",
          "strand": false,
          "transcript": "ENST00000682564.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 451,
          "aa_ref": "M",
          "aa_start": 139,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2020,
          "cdna_start": 547,
          "cds_end": null,
          "cds_length": 1356,
          "cds_start": 417,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000684521.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.417G>A",
          "hgvs_p": "p.Met139Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000507521.1",
          "strand": false,
          "transcript": "ENST00000684521.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 396,
          "aa_ref": "M",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3037,
          "cdna_start": 428,
          "cds_end": null,
          "cds_length": 1191,
          "cds_start": 252,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000682142.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.252G>A",
          "hgvs_p": "p.Met84Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000506804.1",
          "strand": false,
          "transcript": "ENST00000682142.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 356,
          "aa_ref": "M",
          "aa_start": 44,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3145,
          "cdna_start": 518,
          "cds_end": null,
          "cds_length": 1071,
          "cds_start": 132,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "NM_019000.5",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.132G>A",
          "hgvs_p": "p.Met44Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_061873.2",
          "strand": false,
          "transcript": "NM_019000.5",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 322,
          "aa_ref": "M",
          "aa_start": 10,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1647,
          "cdna_start": 174,
          "cds_end": null,
          "cds_length": 969,
          "cds_start": 30,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000682628.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.30G>A",
          "hgvs_p": "p.Met10Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000507536.1",
          "strand": false,
          "transcript": "ENST00000682628.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 322,
          "aa_ref": "M",
          "aa_start": 10,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1831,
          "cdna_start": 358,
          "cds_end": null,
          "cds_length": 969,
          "cds_start": 30,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000683414.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.30G>A",
          "hgvs_p": "p.Met10Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000508335.1",
          "strand": false,
          "transcript": "ENST00000683414.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 322,
          "aa_ref": "M",
          "aa_start": 10,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1196,
          "cdna_start": 191,
          "cds_end": null,
          "cds_length": 969,
          "cds_start": 30,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000683539.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.30G>A",
          "hgvs_p": "p.Met10Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000507466.1",
          "strand": false,
          "transcript": "ENST00000683539.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 537,
          "aa_ref": "M",
          "aa_start": 225,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3328,
          "cdna_start": 701,
          "cds_end": null,
          "cds_length": 1614,
          "cds_start": 675,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "XM_011514053.4",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.675G>A",
          "hgvs_p": "p.Met225Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_011512355.1",
          "strand": false,
          "transcript": "XM_011514053.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 396,
          "aa_ref": "M",
          "aa_start": 84,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3265,
          "cdna_start": 638,
          "cds_end": null,
          "cds_length": 1191,
          "cds_start": 252,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 8,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "XM_011514054.3",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.252G>A",
          "hgvs_p": "p.Met84Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_011512356.1",
          "strand": false,
          "transcript": "XM_011514054.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "I",
          "aa_end": null,
          "aa_length": 364,
          "aa_ref": "M",
          "aa_start": 52,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 3298,
          "cdna_start": 671,
          "cds_end": null,
          "cds_length": 1095,
          "cds_start": 156,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "XM_011514055.4",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.156G>A",
          "hgvs_p": "p.Met52Ile",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_011512357.1",
          "strand": false,
          "transcript": "XM_011514055.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 141,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1639,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 426,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 5,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000684456.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.-398-4389G>A",
          "hgvs_p": null,
          "intron_rank": 1,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000508060.1",
          "strand": false,
          "transcript": "ENST00000684456.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": 43,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 536,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": 132,
          "cds_start": null,
          "consequences": [
            "intron_variant"
          ],
          "exon_count": 3,
          "exon_rank": null,
          "exon_rank_end": null,
          "feature": "ENST00000682033.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "c.126-8142G>A",
          "hgvs_p": null,
          "intron_rank": 2,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000507240.1",
          "strand": false,
          "transcript": "ENST00000682033.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "retained_intron",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 585,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000506441.1",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "n.206G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
          "transcript": "ENST00000506441.1",
          "transcript_support_level": 2
        },
        {
          "aa_alt": null,
          "aa_end": null,
          "aa_length": null,
          "aa_ref": null,
          "aa_start": null,
          "biotype": "pseudogene",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1676,
          "cdna_start": null,
          "cds_end": null,
          "cds_length": null,
          "cds_start": null,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_count": 7,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000509977.2",
          "gene_hgnc_id": 25964,
          "gene_symbol": "RETREG1",
          "hgvs_c": "n.203G>A",
          "hgvs_p": null,
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": false,
          "protein_id": null,
          "strand": false,
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.