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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-168431457-TCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=168431457&ref=TCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "5",
      "pos": 168431457,
      "ref": "TCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG",
      "alt": "T",
      "effect": "intron_variant",
      "transcript": "ENST00000265293.9",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": 15,
          "intron_rank_end": null,
          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "c.2280+29_2280+60delGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG",
          "hgvs_p": null,
          "transcript": "NM_015238.3",
          "protein_id": "NP_056053.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1113,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3342,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 7136,
          "mane_select": "ENST00000265293.9",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": 15,
          "intron_rank_end": null,
          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "c.2280+14_2280+45delCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG",
          "hgvs_p": null,
          "transcript": "ENST00000265293.9",
          "protein_id": "ENSP00000265293.4",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1113,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3342,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 7136,
          "mane_select": "NM_015238.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": 14,
          "intron_rank_end": null,
          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "c.2163+14_2163+45delCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG",
          "hgvs_p": null,
          "transcript": "ENST00000393895.7",
          "protein_id": "ENSP00000377473.3",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 1079,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 3240,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3980,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": 10,
          "intron_rank_end": null,
          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "c.1608+14_1608+45delCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG",
          "hgvs_p": null,
          "transcript": "ENST00000524228.5",
          "protein_id": "ENSP00000429339.1",
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 888,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": 2667,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3408,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": 1,
          "intron_rank_end": null,
          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "n.81+14_81+45delCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG",
          "hgvs_p": null,
          "transcript": "ENST00000522140.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
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          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 1015,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
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          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": 15,
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          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "c.2280+29_2280+60delGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG",
          "hgvs_p": null,
          "transcript": "NM_001161661.2",
          "protein_id": "NP_001155133.1",
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        {
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          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 23,
          "intron_rank": 15,
          "intron_rank_end": null,
          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "c.2280+14_2280+45delCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG",
          "hgvs_p": null,
          "transcript": "ENST00000521089.5",
          "protein_id": "ENSP00000427772.1",
          "transcript_support_level": 2,
          "aa_start": null,
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          "aa_length": 1119,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 3562,
          "mane_select": null,
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        },
        {
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          "consequences": [
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          ],
          "exon_rank": null,
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          "exon_count": 23,
          "intron_rank": 15,
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          "gene_symbol": "WWC1",
          "gene_hgnc_id": 29435,
          "hgvs_c": "c.2280+29_2280+60delGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTG",
          "hgvs_p": null,
          "transcript": "NM_001161662.2",
          "protein_id": "NP_001155134.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": -4,
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          "cdna_start": null,
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        {
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          "intron_rank": 2,
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          "gene_symbol": "WWC1",
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          "hgvs_c": "c.258+14_258+45delCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGG",
          "hgvs_p": null,
          "transcript": "ENST00000524038.5",
          "protein_id": "ENSP00000428084.1",
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        {
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      "acmg_by_gene": [
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}