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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-173090650-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=173090650&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "5",
      "pos": 173090650,
      "ref": "C",
      "alt": "T",
      "effect": "synonymous_variant",
      "transcript": "NM_153607.3",
      "consequences": [
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "NM_153607.3",
          "protein_id": "NP_705835.2",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000296953.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_153607.3"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000296953.6",
          "protein_id": "ENSP00000296953.2",
          "transcript_support_level": 1,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_153607.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000296953.6"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000520420.5",
          "protein_id": "ENSP00000428290.1",
          "transcript_support_level": 1,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 417,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000520420.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000522692.5",
          "protein_id": "ENSP00000431107.1",
          "transcript_support_level": 1,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 417,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1254,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000522692.5"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.546C>T",
          "hgvs_p": "p.Pro182Pro",
          "transcript": "ENST00000965318.1",
          "protein_id": "ENSP00000635377.1",
          "transcript_support_level": null,
          "aa_start": 182,
          "aa_end": null,
          "aa_length": 664,
          "cds_start": 546,
          "cds_end": null,
          "cds_length": 1995,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000965318.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000863346.1",
          "protein_id": "ENSP00000533405.1",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000863346.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000863347.1",
          "protein_id": "ENSP00000533406.1",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000863347.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000934786.1",
          "protein_id": "ENSP00000604845.1",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000934786.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000965315.1",
          "protein_id": "ENSP00000635374.1",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000965315.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000965316.1",
          "protein_id": "ENSP00000635375.1",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000965317.1",
          "protein_id": "ENSP00000635376.1",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000965317.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
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          "protein_id": "ENSP00000635378.1",
          "transcript_support_level": null,
          "aa_start": 157,
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          "aa_length": 639,
          "cds_start": 471,
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          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
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          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000965321.1",
          "protein_id": "ENSP00000635380.1",
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          "biotype": "protein_coding",
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        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
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          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "ENST00000965322.1",
          "protein_id": "ENSP00000635381.1",
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        {
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          ],
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          "gene_symbol": "CREBRF",
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          "hgvs_c": "c.471C>T",
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          "biotype": "protein_coding",
          "feature": "ENST00000934785.1"
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        {
          "aa_ref": "P",
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          "canonical": false,
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          "strand": true,
          "consequences": [
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          ],
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          "exon_count": 8,
          "intron_rank": null,
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          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
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          "transcript": "ENST00000965320.1",
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        {
          "aa_ref": "P",
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          "intron_rank": null,
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          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "NM_001168393.2",
          "protein_id": "NP_001161865.1",
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        {
          "aa_ref": "P",
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        },
        {
          "aa_ref": "P",
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          "gene_symbol": "CREBRF",
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          "hgvs_c": "c.471C>T",
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        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
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          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "XM_047416801.1",
          "protein_id": "XP_047272757.1",
          "transcript_support_level": null,
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          "biotype": "protein_coding",
          "feature": "XM_047416801.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro",
          "transcript": "XM_047416802.1",
          "protein_id": "XP_047272758.1",
          "transcript_support_level": null,
          "aa_start": 157,
          "aa_end": null,
          "aa_length": 639,
          "cds_start": 471,
          "cds_end": null,
          "cds_length": 1920,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047416802.1"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.447C>T",
          "hgvs_p": "p.Pro149Pro",
          "transcript": "XM_005265821.4",
          "protein_id": "XP_005265878.1",
          "transcript_support_level": null,
          "aa_start": 149,
          "aa_end": null,
          "aa_length": 631,
          "cds_start": 447,
          "cds_end": null,
          "cds_length": 1896,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_005265821.4"
        },
        {
          "aa_ref": "P",
          "aa_alt": "P",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "c.447C>T",
          "hgvs_p": "p.Pro149Pro",
          "transcript": "XM_011534442.2",
          "protein_id": "XP_011532744.1",
          "transcript_support_level": null,
          "aa_start": 149,
          "aa_end": null,
          "aa_length": 631,
          "cds_start": 447,
          "cds_end": null,
          "cds_length": 1896,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_011534442.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CREBRF",
          "gene_hgnc_id": 24050,
          "hgvs_c": "n.748C>T",
          "hgvs_p": null,
          "transcript": "ENST00000520464.1",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000520464.1"
        }
      ],
      "gene_symbol": "CREBRF",
      "gene_hgnc_id": 24050,
      "dbsnp": "rs35768619",
      "frequency_reference_population": 0.0018976708,
      "hom_count_reference_population": 59,
      "allele_count_reference_population": 3063,
      "gnomad_exomes_af": 0.00107329,
      "gnomad_genomes_af": 0.00981435,
      "gnomad_exomes_ac": 1569,
      "gnomad_genomes_ac": 1494,
      "gnomad_exomes_homalt": 38,
      "gnomad_genomes_homalt": 21,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.8100000023841858,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.81,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -1.405,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -15,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Moderate,BP7,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -15,
          "benign_score": 15,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Moderate",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "NM_153607.3",
          "gene_symbol": "CREBRF",
          "hgnc_id": 24050,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.471C>T",
          "hgvs_p": "p.Pro157Pro"
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "B:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Benign",
      "custom_annotations": null
    }
  ],
  "message": null
}